Abiotrophia defectiva ATCC 49176

Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine

GC Content: 37.1%, Released Date: March 17, 2009 #17677

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACIN02000001
2.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ACIN02000002
143.8 KB
130 CDS

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whole genome shotgun sequence
NZ_ACIN02000003
196.0 KB
196 CDS

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whole genome shotgun sequence
NZ_ACIN02000004
68.0 KB
60 CDS

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whole genome shotgun sequence
NZ_ACIN02000005
322.2 KB
315 CDS

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whole genome shotgun sequence
NZ_ACIN02000006
62.8 KB
53 CDS

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whole genome shotgun sequence
NZ_ACIN02000007
416.8 KB
388 CDS

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whole genome shotgun sequence
NZ_ACIN02000008
7.9 KB
7 CDS

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whole genome shotgun sequence
NZ_ACIN02000009
152.6 KB
141 CDS

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whole genome shotgun sequence
NZ_ACIN02000010
11.7 KB
7 CDS

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whole genome shotgun sequence
NZ_ACIN02000011
139.4 KB
123 CDS

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whole genome shotgun sequence
NZ_ACIN02000012
48.3 KB
46 CDS

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whole genome shotgun sequence
NZ_ACIN02000013
692.3 KB
657 CDS

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whole genome shotgun sequence
NZ_ACIN02000014
62.2 KB
58 CDS

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whole genome shotgun sequence
NZ_ACIN02000015
1.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ACIN02000016
435.2 KB
475 CDS

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whole genome shotgun sequence
NZ_ACIN02000017
204.3 KB
205 CDS

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whole genome shotgun sequence
NZ_ACIN02000018
2.6 KB
4 CDS

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whole genome shotgun sequence
NZ_ACIN02000019
93.3 KB
87 CDS

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whole genome shotgun sequence
NZ_ACIN02000020
101.5 KB
91 CDS

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whole genome shotgun sequence
NZ_ACIN02000021
169.8 KB
170 CDS

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whole genome shotgun sequence
NZ_ACIN02000022
17.2 KB
23 CDS

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whole genome shotgun sequence
NZ_ACIN02000023
1.9 KB
3 CDS

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whole genome shotgun sequence
NZ_ACIN02000024
40.1 KB
42 CDS

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whole genome shotgun sequence
NZ_ACIN02000025
582 bytes
2 CDS

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whole genome shotgun sequence
NZ_ACIN02000026
1.7 KB
3 CDS

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Taxonomy

External Links

Abiotrophia defectiva ATCC 49176

Search Genome

Sequences

PubMed Search for Abiotrophia defectiva ATCC 49176

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