Acidaminococcus sp. D21

Broad Institute

GC Content: 50.2%, Released Date: March 10, 2009 #17678

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACGB01000001
134.8 KB
138 CDS

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whole genome shotgun sequence
NZ_ACGB01000002
109.2 KB
114 CDS

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whole genome shotgun sequence
NZ_ACGB01000003
103.9 KB
89 CDS

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whole genome shotgun sequence
NZ_ACGB01000004
98.0 KB
100 CDS

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whole genome shotgun sequence
NZ_ACGB01000005
88.0 KB
66 CDS

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whole genome shotgun sequence
NZ_ACGB01000006
77.3 KB
69 CDS

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whole genome shotgun sequence
NZ_ACGB01000007
75.1 KB
67 CDS

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whole genome shotgun sequence
NZ_ACGB01000008
55.8 KB
44 CDS

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whole genome shotgun sequence
NZ_ACGB01000009
55.1 KB
41 CDS

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whole genome shotgun sequence
NZ_ACGB01000010
52.3 KB
48 CDS

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whole genome shotgun sequence
NZ_ACGB01000011
49.6 KB
51 CDS

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whole genome shotgun sequence
NZ_ACGB01000012
47.7 KB
39 CDS

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whole genome shotgun sequence
NZ_ACGB01000013
46.0 KB
54 CDS

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whole genome shotgun sequence
NZ_ACGB01000014
44.8 KB
36 CDS

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whole genome shotgun sequence
NZ_ACGB01000015
44.4 KB
37 CDS

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whole genome shotgun sequence
NZ_ACGB01000016
42.1 KB
37 CDS

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whole genome shotgun sequence
NZ_ACGB01000017
41.4 KB
40 CDS

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whole genome shotgun sequence
NZ_ACGB01000018
41.1 KB
41 CDS

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whole genome shotgun sequence
NZ_ACGB01000019
40.9 KB
38 CDS

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whole genome shotgun sequence
NZ_ACGB01000020
38.8 KB
34 CDS

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whole genome shotgun sequence
NZ_ACGB01000021
36.6 KB
27 CDS

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whole genome shotgun sequence
NZ_ACGB01000022
36.0 KB
31 CDS

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whole genome shotgun sequence
NZ_ACGB01000023
35.9 KB
40 CDS

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whole genome shotgun sequence
NZ_ACGB01000024
35.1 KB
35 CDS

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whole genome shotgun sequence
NZ_ACGB01000025
32.4 KB
31 CDS

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whole genome shotgun sequence
NZ_ACGB01000026
31.0 KB
26 CDS

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whole genome shotgun sequence
NZ_ACGB01000027
30.2 KB
33 CDS

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whole genome shotgun sequence
NZ_ACGB01000028
28.8 KB
26 CDS

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whole genome shotgun sequence
NZ_ACGB01000029
28.6 KB
27 CDS

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whole genome shotgun sequence
NZ_ACGB01000030
28.0 KB
26 CDS

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whole genome shotgun sequence
NZ_ACGB01000031
27.5 KB
23 CDS

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whole genome shotgun sequence
NZ_ACGB01000032
27.4 KB
24 CDS

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whole genome shotgun sequence
NZ_ACGB01000033
26.6 KB
28 CDS

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whole genome shotgun sequence
NZ_ACGB01000034
25.7 KB
22 CDS

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whole genome shotgun sequence
NZ_ACGB01000035
25.5 KB
21 CDS

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whole genome shotgun sequence
NZ_ACGB01000036
23.6 KB
21 CDS

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whole genome shotgun sequence
NZ_ACGB01000037
23.1 KB
24 CDS

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whole genome shotgun sequence
NZ_ACGB01000038
21.5 KB
18 CDS

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whole genome shotgun sequence
NZ_ACGB01000039
21.5 KB
15 CDS

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whole genome shotgun sequence
NZ_ACGB01000040
19.6 KB
17 CDS

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whole genome shotgun sequence
NZ_ACGB01000041
19.4 KB
16 CDS

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whole genome shotgun sequence
NZ_ACGB01000042
19.1 KB
18 CDS

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whole genome shotgun sequence
NZ_ACGB01000043
18.7 KB
19 CDS

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whole genome shotgun sequence
NZ_ACGB01000044
17.8 KB
8 CDS

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whole genome shotgun sequence
NZ_ACGB01000045
16.4 KB
17 CDS

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whole genome shotgun sequence
NZ_ACGB01000046
15.7 KB
12 CDS

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whole genome shotgun sequence
NZ_ACGB01000047
15.5 KB
17 CDS

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whole genome shotgun sequence
NZ_ACGB01000048
15.5 KB
18 CDS

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whole genome shotgun sequence
NZ_ACGB01000049
14.8 KB
11 CDS

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whole genome shotgun sequence
NZ_ACGB01000050
14.7 KB
14 CDS

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whole genome shotgun sequence
NZ_ACGB01000051
12.6 KB
13 CDS

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whole genome shotgun sequence
NZ_ACGB01000052
11.8 KB
12 CDS

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whole genome shotgun sequence
NZ_ACGB01000053
11.7 KB
11 CDS

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whole genome shotgun sequence
NZ_ACGB01000054
11.0 KB
9 CDS

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whole genome shotgun sequence
NZ_ACGB01000055
10.7 KB
9 CDS

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whole genome shotgun sequence
NZ_ACGB01000056
10.5 KB
8 CDS

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whole genome shotgun sequence
NZ_ACGB01000057
10.2 KB
8 CDS

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whole genome shotgun sequence
NZ_ACGB01000058
9.7 KB
10 CDS

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whole genome shotgun sequence
NZ_ACGB01000059
9.0 KB
8 CDS

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whole genome shotgun sequence
NZ_ACGB01000060
8.6 KB
9 CDS

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whole genome shotgun sequence
NZ_ACGB01000061
8.6 KB
11 CDS

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whole genome shotgun sequence
NZ_ACGB01000062
8.0 KB
7 CDS

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whole genome shotgun sequence
NZ_ACGB01000063
6.4 KB
8 CDS

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whole genome shotgun sequence
NZ_ACGB01000064
6.3 KB
4 CDS

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whole genome shotgun sequence
NZ_ACGB01000065
6.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ACGB01000066
5.3 KB
8 CDS

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whole genome shotgun sequence
NZ_ACGB01000067
3.8 KB
3 CDS

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whole genome shotgun sequence
NZ_ACGB01000068
3.4 KB
7 CDS

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whole genome shotgun sequence
NZ_ACGB01000069
3.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ACGB01000070
2.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ACGB01000071
1.7 KB
0 CDS

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whole genome shotgun sequence
NZ_ACGB01000072
1.5 KB
1 CDS

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whole genome shotgun sequence
NZ_ACGB01000073
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ACGB01000074
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ACGB01000075
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ACGB01000076
890 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGB01000077
579 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGB01000078
575 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGB01000079
535 bytes
0 CDS

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Taxonomy

External Links

Acidaminococcus sp. D21

Search Genome

Sequences

PubMed Search for Acidaminococcus sp. D21

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