Acidilobus saccharovorans 345-15

Centre Bioengineering RAS

Genome Size: 1.5 megabases, GC Content: 54.5%, Released Date: Aug. 6, 2010 #19747

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
CP001742
1.4 MB
1499 CDS

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References

The Genome Sequence of the Crenarchaeon Acidilobus saccharovorans Supports a New Order, Acidilobales, and Suggests an Important Ecological Role in Terrestrial Acidic Hot Springs
Mardanov,A.V., Svetlitchnyi,V.A., Beletsky,A.V., Prokofeva,M.I., Bonch-Osmolovskaya,E.A., Ravin,N.V. and Skryabin,K.G. Appl. Environ. Microbiol. 76 (16), 5652-5657 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Acidilobus saccharovorans 345-15

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Sequences

References

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