Acidithiobacillus caldus ATCC 51756

Center for Bioinformatics and Genome Biology

Released Date: July 31, 2009 #17679

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACVD01000001
1.1 KB
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000002
931 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000003
942 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVD01000004
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ACVD01000005
842 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000006
8.5 KB
8 CDS

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whole genome shotgun sequence
NZ_ACVD01000007
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ACVD01000008
2.4 KB
3 CDS

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whole genome shotgun sequence
NZ_ACVD01000009
3.0 KB
3 CDS

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whole genome shotgun sequence
NZ_ACVD01000010
2.5 KB
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000011
3.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ACVD01000012
2.9 KB
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000013
816 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000014
968 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVD01000015
4.0 KB
6 CDS

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whole genome shotgun sequence
NZ_ACVD01000016
13.0 KB
15 CDS

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whole genome shotgun sequence
NZ_ACVD01000017
8.8 KB
8 CDS

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whole genome shotgun sequence
NZ_ACVD01000018
27.8 KB
24 CDS

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whole genome shotgun sequence
NZ_ACVD01000019
16.6 KB
14 CDS

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whole genome shotgun sequence
NZ_ACVD01000020
6.6 KB
5 CDS

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whole genome shotgun sequence
NZ_ACVD01000021
2.4 KB
2 CDS

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whole genome shotgun sequence
NZ_ACVD01000022
3.8 KB
3 CDS

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whole genome shotgun sequence
NZ_ACVD01000023
9.3 KB
10 CDS

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whole genome shotgun sequence
NZ_ACVD01000024
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ACVD01000025
776 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000026
834 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000027
4.6 KB
3 CDS

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whole genome shotgun sequence
NZ_ACVD01000028
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000029
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ACVD01000030
15.6 KB
13 CDS

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whole genome shotgun sequence
NZ_ACVD01000031
4.3 KB
6 CDS

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whole genome shotgun sequence
NZ_ACVD01000032
13.4 KB
12 CDS

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whole genome shotgun sequence
NZ_ACVD01000033
6.3 KB
8 CDS

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whole genome shotgun sequence
NZ_ACVD01000034
19.7 KB
24 CDS

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whole genome shotgun sequence
NZ_ACVD01000035
16.9 KB
13 CDS

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whole genome shotgun sequence
NZ_ACVD01000036
8.1 KB
13 CDS

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whole genome shotgun sequence
NZ_ACVD01000037
885 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000038
771 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVD01000039
5.4 KB
2 CDS

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whole genome shotgun sequence
NZ_ACVD01000040
1.4 KB
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000041
830 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000042
1.4 KB
2 CDS

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whole genome shotgun sequence
NZ_ACVD01000043
4.7 KB
2 CDS

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whole genome shotgun sequence
NZ_ACVD01000044
9.9 KB
11 CDS

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whole genome shotgun sequence
NZ_ACVD01000045
19.2 KB
20 CDS

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whole genome shotgun sequence
NZ_ACVD01000046
20.7 KB
19 CDS

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whole genome shotgun sequence
NZ_ACVD01000047
56.8 KB
59 CDS

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whole genome shotgun sequence
NZ_ACVD01000048
15.8 KB
19 CDS

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whole genome shotgun sequence
NZ_ACVD01000049
51.1 KB
54 CDS

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whole genome shotgun sequence
NZ_ACVD01000050
95.8 KB
83 CDS

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whole genome shotgun sequence
NZ_ACVD01000051
55.2 KB
64 CDS

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whole genome shotgun sequence
NZ_ACVD01000052
47.3 KB
55 CDS

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whole genome shotgun sequence
NZ_ACVD01000053
79.9 KB
73 CDS

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whole genome shotgun sequence
NZ_ACVD01000054
27.7 KB
27 CDS

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whole genome shotgun sequence
NZ_ACVD01000055
35.9 KB
36 CDS

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whole genome shotgun sequence
NZ_ACVD01000056
27.8 KB
31 CDS

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whole genome shotgun sequence
NZ_ACVD01000057
116.7 KB
118 CDS

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whole genome shotgun sequence
NZ_ACVD01000058
86.5 KB
102 CDS

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whole genome shotgun sequence
NZ_ACVD01000059
13.9 KB
16 CDS

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whole genome shotgun sequence
NZ_ACVD01000060
70.7 KB
69 CDS

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whole genome shotgun sequence
NZ_ACVD01000061
36.5 KB
32 CDS

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whole genome shotgun sequence
NZ_ACVD01000062
54.0 KB
56 CDS

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whole genome shotgun sequence
NZ_ACVD01000063
70.3 KB
77 CDS

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whole genome shotgun sequence
NZ_ACVD01000064
72.1 KB
70 CDS

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whole genome shotgun sequence
NZ_ACVD01000065
15.1 KB
10 CDS

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whole genome shotgun sequence
NZ_ACVD01000066
26.6 KB
26 CDS

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whole genome shotgun sequence
NZ_ACVD01000067
23.4 KB
26 CDS

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whole genome shotgun sequence
NZ_ACVD01000068
23.6 KB
38 CDS

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whole genome shotgun sequence
NZ_ACVD01000069
5.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ACVD01000070
161.0 KB
159 CDS

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whole genome shotgun sequence
NZ_ACVD01000071
26.2 KB
25 CDS

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whole genome shotgun sequence
NZ_ACVD01000072
22.8 KB
23 CDS

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whole genome shotgun sequence
NZ_ACVD01000073
97.4 KB
116 CDS

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whole genome shotgun sequence
NZ_ACVD01000074
39.7 KB
36 CDS

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whole genome shotgun sequence
NZ_ACVD01000075
19.7 KB
17 CDS

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whole genome shotgun sequence
NZ_ACVD01000076
87.7 KB
71 CDS

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whole genome shotgun sequence
NZ_ACVD01000077
33.5 KB
31 CDS

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whole genome shotgun sequence
NZ_ACVD01000078
116.5 KB
115 CDS

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whole genome shotgun sequence
NZ_ACVD01000079
41.9 KB
41 CDS

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whole genome shotgun sequence
NZ_ACVD01000080
28.6 KB
29 CDS

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whole genome shotgun sequence
NZ_ACVD01000081
18.3 KB
19 CDS

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whole genome shotgun sequence
NZ_ACVD01000082
41.9 KB
34 CDS

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whole genome shotgun sequence
NZ_ACVD01000083
106.4 KB
104 CDS

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whole genome shotgun sequence
NZ_ACVD01000084
27.9 KB
22 CDS

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whole genome shotgun sequence
NZ_ACVD01000085
19.5 KB
21 CDS

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whole genome shotgun sequence
NZ_ACVD01000086
56.4 KB
52 CDS

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whole genome shotgun sequence
NZ_ACVD01000087
4.4 KB
4 CDS

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whole genome shotgun sequence
NZ_ACVD01000088
2.5 KB
5 CDS

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whole genome shotgun sequence
NZ_ACVD01000089
6.0 KB
8 CDS

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whole genome shotgun sequence
NZ_ACVD01000090
1.1 KB
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000091
849 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVD01000092
806 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000093
2.8 KB
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000094
15.1 KB
15 CDS

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whole genome shotgun sequence
NZ_ACVD01000095
5.8 KB
4 CDS

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whole genome shotgun sequence
NZ_ACVD01000096
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000097
2.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000098
740 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000099
829 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVD01000100
813 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000101
1.8 KB
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000102
2.5 KB
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000103
1.9 KB
2 CDS

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whole genome shotgun sequence
NZ_ACVD01000104
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000105
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ACVD01000106
1018 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000107
1.1 KB
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000108
1.1 KB
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000109
788 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000110
849 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000111
793 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000112
737 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000113
2.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ACVD01000114
1.4 KB
2 CDS

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whole genome shotgun sequence
NZ_ACVD01000115
4.8 KB
4 CDS

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whole genome shotgun sequence
NZ_ACVD01000116
102.3 KB
104 CDS

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whole genome shotgun sequence
NZ_ACVD01000117
11.0 KB
13 CDS

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whole genome shotgun sequence
NZ_ACVD01000118
48.6 KB
54 CDS

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whole genome shotgun sequence
NZ_ACVD01000119
14.7 KB
12 CDS

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whole genome shotgun sequence
NZ_ACVD01000120
80.1 KB
68 CDS

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whole genome shotgun sequence
NZ_ACVD01000121
16.7 KB
13 CDS

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whole genome shotgun sequence
NZ_ACVD01000122
29.7 KB
30 CDS

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whole genome shotgun sequence
NZ_ACVD01000123
73.8 KB
62 CDS

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whole genome shotgun sequence
NZ_ACVD01000124
21.1 KB
18 CDS

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whole genome shotgun sequence
NZ_ACVD01000125
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ACVD01000126
12.5 KB
11 CDS

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whole genome shotgun sequence
NZ_ACVD01000127
8.0 KB
6 CDS

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whole genome shotgun sequence
NZ_ACVD01000128
1.7 KB
2 CDS

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whole genome shotgun sequence
NZ_ACVD01000129
3.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ACVD01000130
766 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000131
12.2 KB
13 CDS

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whole genome shotgun sequence
NZ_ACVD01000132
14.6 KB
20 CDS

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whole genome shotgun sequence
NZ_ACVD01000133
3.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ACVD01000134
6.2 KB
6 CDS

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whole genome shotgun sequence
NZ_ACVD01000135
3.6 KB
5 CDS

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whole genome shotgun sequence
NZ_ACVD01000136
2.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ACVD01000137
4.8 KB
6 CDS

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whole genome shotgun sequence
NZ_ACVD01000138
726 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACVD01000139
750 bytes
0 CDS

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References

Draft genome sequence of the extremely acidophilic bacterium Acidithiobacillus caldus ATCC 51756 reveals metabolic versatility in the Acidithiobacillus genus
Valdes,J., Quatrini,R., Hallberg,K., Mangold,S., Dopson,M., Valenzuela,P.D. and Holmes,D.S. J. Bacteriol. (2009) In press
PubMed, PubGet, HubMed
Draft genome sequence of the extremely acidophilic bacterium Acidithiobacillus caldus ATCC 51756 reveals metabolic versatility in the Acidithiobacillus genus
Valdes,J., Quatrini,R., Hallberg,K., Mangold,S., Dopson,M., Valenzuela,P.D. and Holmes,D.S. J. Bacteriol. (2009) In press
PubMed, PubGet, HubMed

Taxonomy

External Links

Acidithiobacillus caldus ATCC 51756

Search Genome

Sequences

References

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