Acidobacterium sp. MP5ACTX9

JGI

Genome Size: 5.4 megabases, Released Date: June 29, 2010 #20103

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

ctg00033, whole genome shotgun sequence
NZ_ADVY01000001
574.4 KB
487 CDS

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ctg00029, whole genome shotgun sequence
NZ_ADVY01000002
416.3 KB
370 CDS

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ctg00024, whole genome shotgun sequence
NZ_ADVY01000003
320.9 KB
261 CDS

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ctg00006, whole genome shotgun sequence
NZ_ADVY01000004
306.8 KB
285 CDS

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ctg00001, whole genome shotgun sequence
NZ_ADVY01000005
291.1 KB
257 CDS

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ctg00042, whole genome shotgun sequence
NZ_ADVY01000006
259.3 KB
177 CDS

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ctg00052, whole genome shotgun sequence
NZ_ADVY01000007
230.1 KB
160 CDS

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ctg00017, whole genome shotgun sequence
NZ_ADVY01000008
226.3 KB
220 CDS

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ctg00021, whole genome shotgun sequence
NZ_ADVY01000009
206.2 KB
168 CDS

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ctg00036, whole genome shotgun sequence
NZ_ADVY01000010
186.6 KB
159 CDS

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ctg00019, whole genome shotgun sequence
NZ_ADVY01000011
165.7 KB
146 CDS

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ctg00016, whole genome shotgun sequence
NZ_ADVY01000012
149.8 KB
145 CDS

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ctg00011, whole genome shotgun sequence
NZ_ADVY01000013
147.5 KB
149 CDS

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ctg00046, whole genome shotgun sequence
NZ_ADVY01000014
131.4 KB
87 CDS

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ctg00015, whole genome shotgun sequence
NZ_ADVY01000015
130.1 KB
120 CDS

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ctg00022, whole genome shotgun sequence
NZ_ADVY01000016
121.7 KB
107 CDS

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ctg00008, whole genome shotgun sequence
NZ_ADVY01000017
107.0 KB
87 CDS

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ctg00026, whole genome shotgun sequence
NZ_ADVY01000018
98.2 KB
91 CDS

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ctg00066, whole genome shotgun sequence
NZ_ADVY01000019
91.9 KB
96 CDS

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ctg00018, whole genome shotgun sequence
NZ_ADVY01000020
87.5 KB
82 CDS

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ctg00025, whole genome shotgun sequence
NZ_ADVY01000021
84.6 KB
79 CDS

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ctg00056, whole genome shotgun sequence
NZ_ADVY01000022
82.5 KB
85 CDS

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ctg00035, whole genome shotgun sequence
NZ_ADVY01000023
80.4 KB
60 CDS

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ctg00028, whole genome shotgun sequence
NZ_ADVY01000024
77.3 KB
82 CDS

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ctg00030, whole genome shotgun sequence
NZ_ADVY01000025
64.3 KB
67 CDS

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ctg00023, whole genome shotgun sequence
NZ_ADVY01000026
62.9 KB
63 CDS

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ctg00032, whole genome shotgun sequence
NZ_ADVY01000027
56.0 KB
50 CDS

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ctg00061, whole genome shotgun sequence
NZ_ADVY01000028
51.4 KB
40 CDS

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ctg00027, whole genome shotgun sequence
NZ_ADVY01000029
42.7 KB
37 CDS

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ctg00055, whole genome shotgun sequence
NZ_ADVY01000030
32.9 KB
33 CDS

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ctg00012, whole genome shotgun sequence
NZ_ADVY01000031
31.2 KB
26 CDS

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ctg00004, whole genome shotgun sequence
NZ_ADVY01000032
30.8 KB
31 CDS

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ctg00054, whole genome shotgun sequence
NZ_ADVY01000033
29.2 KB
26 CDS

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ctg00013, whole genome shotgun sequence
NZ_ADVY01000034
29.0 KB
31 CDS

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ctg00043, whole genome shotgun sequence
NZ_ADVY01000035
28.2 KB
18 CDS

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ctg00058, whole genome shotgun sequence
NZ_ADVY01000036
25.6 KB
33 CDS

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ctg00063, whole genome shotgun sequence
NZ_ADVY01000037
23.6 KB
21 CDS

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ctg00045, whole genome shotgun sequence
NZ_ADVY01000038
23.0 KB
11 CDS

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ctg00009, whole genome shotgun sequence
NZ_ADVY01000039
21.6 KB
37 CDS

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ctg00060, whole genome shotgun sequence
NZ_ADVY01000040
21.3 KB
27 CDS

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ctg00034, whole genome shotgun sequence
NZ_ADVY01000041
18.8 KB
23 CDS

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ctg00041, whole genome shotgun sequence
NZ_ADVY01000042
14.4 KB
11 CDS

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ctg00031, whole genome shotgun sequence
NZ_ADVY01000043
14.3 KB
18 CDS

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ctg00047, whole genome shotgun sequence
NZ_ADVY01000044
14.0 KB
7 CDS

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ctg00048, whole genome shotgun sequence
NZ_ADVY01000045
11.2 KB
8 CDS

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ctg00005, whole genome shotgun sequence
NZ_ADVY01000046
11.1 KB
11 CDS

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ctg00049, whole genome shotgun sequence
NZ_ADVY01000047
10.2 KB
9 CDS

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ctg00053, whole genome shotgun sequence
NZ_ADVY01000048
10.1 KB
6 CDS

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ctg00050, whole genome shotgun sequence
NZ_ADVY01000049
7.8 KB
4 CDS

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ctg00062, whole genome shotgun sequence
NZ_ADVY01000050
7.1 KB
7 CDS

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ctg00067, whole genome shotgun sequence
NZ_ADVY01000051
6.6 KB
5 CDS

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ctg00057, whole genome shotgun sequence
NZ_ADVY01000052
5.5 KB
2 CDS

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ctg00020, whole genome shotgun sequence
NZ_ADVY01000053
5.4 KB
4 CDS

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ctg00068, whole genome shotgun sequence
NZ_ADVY01000054
4.9 KB
5 CDS

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ctg00037, whole genome shotgun sequence
NZ_ADVY01000055
4.4 KB
5 CDS

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ctg00069, whole genome shotgun sequence
NZ_ADVY01000056
2.2 KB
4 CDS

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ctg00070, whole genome shotgun sequence
NZ_ADVY01000057
2.2 KB
4 CDS

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ctg00065, whole genome shotgun sequence
NZ_ADVY01000058
2.1 KB
1 CDS

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ctg00064, whole genome shotgun sequence
NZ_ADVY01000059
1.9 KB
2 CDS

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ctg00059, whole genome shotgun sequence
NZ_ADVY01000060
1.4 KB
3 CDS

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ctg00039, whole genome shotgun sequence
NZ_ADVY01000061
1.4 KB
2 CDS

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ctg00071, whole genome shotgun sequence
NZ_ADVY01000062
1.4 KB
2 CDS

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ctg00003, whole genome shotgun sequence
NZ_ADVY01000063
1.4 KB
1 CDS

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ctg00014, whole genome shotgun sequence
NZ_ADVY01000064
1.4 KB
1 CDS

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ctg00072, whole genome shotgun sequence
NZ_ADVY01000065
1.3 KB
1 CDS

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ctg00073, whole genome shotgun sequence
NZ_ADVY01000066
930 bytes
1 CDS

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ctg00010, whole genome shotgun sequence
NZ_ADVY01000067
877 bytes
1 CDS

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ctg00044, whole genome shotgun sequence
NZ_ADVY01000068
748 bytes
2 CDS

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ctg00051, whole genome shotgun sequence
NZ_ADVY01000069
721 bytes
1 CDS

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ctg00074, whole genome shotgun sequence
NZ_ADVY01000070
707 bytes
1 CDS

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ctg00075, whole genome shotgun sequence
NZ_ADVY01000071
690 bytes
1 CDS

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ctg00038, whole genome shotgun sequence
NZ_ADVY01000072
613 bytes
1 CDS

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ctg00076, whole genome shotgun sequence
NZ_ADVY01000073
591 bytes
1 CDS

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Taxonomy

External Links

Acidobacterium sp. MP5ACTX9

Search Genome

Sequences

PubMed Search for Acidobacterium sp. MP5ACTX9

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