Acidobacterium sp. SP1PR4

JGI

Genome Size: 5.1 megabases, Released Date: Sept. 27, 2010 #20104

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

ctg144, whole genome shotgun sequence
NZ_AEHE01000001
4.8 MB
0 CDS

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ctg143, whole genome shotgun sequence
NZ_AEHE01000002
12.9 KB
6 CDS

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ctg142, whole genome shotgun sequence
NZ_AEHE01000003
1.5 KB
2 CDS

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ctg141, whole genome shotgun sequence
NZ_AEHE01000004
1.1 KB
1 CDS

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ctg122, whole genome shotgun sequence
NZ_AEHE01000005
864 bytes
3 CDS

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ctg99, whole genome shotgun sequence
NZ_AEHE01000006
819 bytes
1 CDS

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ctg113, whole genome shotgun sequence
NZ_AEHE01000007
782 bytes
1 CDS

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ctg133, whole genome shotgun sequence
NZ_AEHE01000008
769 bytes
2 CDS

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ctg116, whole genome shotgun sequence
NZ_AEHE01000009
756 bytes
2 CDS

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ctg102, whole genome shotgun sequence
NZ_AEHE01000010
753 bytes
2 CDS

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ctg114, whole genome shotgun sequence
NZ_AEHE01000011
751 bytes
2 CDS

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ctg127, whole genome shotgun sequence
NZ_AEHE01000012
732 bytes
2 CDS

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ctg119, whole genome shotgun sequence
NZ_AEHE01000013
730 bytes
2 CDS

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ctg3, whole genome shotgun sequence
NZ_AEHE01000014
713 bytes
1 CDS

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ctg136, whole genome shotgun sequence
NZ_AEHE01000015
707 bytes
2 CDS

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ctg118, whole genome shotgun sequence
NZ_AEHE01000016
702 bytes
2 CDS

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ctg100, whole genome shotgun sequence
NZ_AEHE01000017
685 bytes
1 CDS

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ctg130, whole genome shotgun sequence
NZ_AEHE01000018
679 bytes
2 CDS

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ctg81, whole genome shotgun sequence
NZ_AEHE01000019
662 bytes
2 CDS

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ctg115, whole genome shotgun sequence
NZ_AEHE01000020
657 bytes
2 CDS

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ctg84, whole genome shotgun sequence
NZ_AEHE01000021
650 bytes
1 CDS

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ctg30, whole genome shotgun sequence
NZ_AEHE01000022
647 bytes
1 CDS

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ctg103, whole genome shotgun sequence
NZ_AEHE01000023
643 bytes
1 CDS

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ctg101, whole genome shotgun sequence
NZ_AEHE01000024
630 bytes
1 CDS

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ctg128, whole genome shotgun sequence
NZ_AEHE01000025
617 bytes
1 CDS

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ctg126, whole genome shotgun sequence
NZ_AEHE01000026
604 bytes
2 CDS

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ctg135, whole genome shotgun sequence
NZ_AEHE01000027
604 bytes
1 CDS

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ctg117, whole genome shotgun sequence
NZ_AEHE01000028
587 bytes
1 CDS

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ctg124, whole genome shotgun sequence
NZ_AEHE01000029
583 bytes
1 CDS

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ctg82, whole genome shotgun sequence
NZ_AEHE01000030
581 bytes
1 CDS

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ctg87, whole genome shotgun sequence
NZ_AEHE01000031
561 bytes
2 CDS

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ctg88, whole genome shotgun sequence
NZ_AEHE01000032
560 bytes
2 CDS

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ctg105, whole genome shotgun sequence
NZ_AEHE01000033
555 bytes
1 CDS

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ctg104, whole genome shotgun sequence
NZ_AEHE01000034
540 bytes
1 CDS

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ctg80, whole genome shotgun sequence
NZ_AEHE01000035
537 bytes
1 CDS

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ctg132, whole genome shotgun sequence
NZ_AEHE01000036
535 bytes
1 CDS

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ctg112, whole genome shotgun sequence
NZ_AEHE01000037
535 bytes
2 CDS

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ctg138, whole genome shotgun sequence
NZ_AEHE01000038
533 bytes
1 CDS

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ctg95, whole genome shotgun sequence
NZ_AEHE01000039
520 bytes
1 CDS

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ctg98, whole genome shotgun sequence
NZ_AEHE01000040
518 bytes
1 CDS

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ctg78, whole genome shotgun sequence
NZ_AEHE01000041
517 bytes
1 CDS

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ctg72, whole genome shotgun sequence
NZ_AEHE01000042
512 bytes
0 CDS

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ctg129, whole genome shotgun sequence
NZ_AEHE01000043
511 bytes
2 CDS

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Taxonomy

External Links

Acidobacterium sp. SP1PR4

Search Genome

Sequences

PubMed Search for Acidobacterium sp. SP1PR4

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