Acidovorax avenae subsp. avenae ATCC 19860

DOE Joint Genome Institute

Genome Size: 5.4 megabases, GC Content: 68.9%, Released Date: Dec. 8, 2009 #20105

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ADCB01000001
487.9 KB
441 CDS

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whole genome shotgun sequence
NZ_ADCB01000002
434.9 KB
407 CDS

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whole genome shotgun sequence
NZ_ADCB01000003
293.7 KB
257 CDS

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whole genome shotgun sequence
NZ_ADCB01000004
270.9 KB
233 CDS

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whole genome shotgun sequence
NZ_ADCB01000005
223.5 KB
204 CDS

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whole genome shotgun sequence
NZ_ADCB01000006
180.7 KB
181 CDS

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whole genome shotgun sequence
NZ_ADCB01000007
177.1 KB
159 CDS

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whole genome shotgun sequence
NZ_ADCB01000008
157.0 KB
134 CDS

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whole genome shotgun sequence
NZ_ADCB01000009
155.4 KB
148 CDS

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whole genome shotgun sequence
NZ_ADCB01000010
139.8 KB
131 CDS

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whole genome shotgun sequence
NZ_ADCB01000011
138.2 KB
130 CDS

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whole genome shotgun sequence
NZ_ADCB01000012
132.9 KB
132 CDS

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whole genome shotgun sequence
NZ_ADCB01000013
132.1 KB
113 CDS

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whole genome shotgun sequence
NZ_ADCB01000014
124.2 KB
115 CDS

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whole genome shotgun sequence
NZ_ADCB01000015
124.0 KB
101 CDS

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whole genome shotgun sequence
NZ_ADCB01000016
121.8 KB
119 CDS

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whole genome shotgun sequence
NZ_ADCB01000017
121.3 KB
108 CDS

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whole genome shotgun sequence
NZ_ADCB01000018
111.8 KB
103 CDS

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whole genome shotgun sequence
NZ_ADCB01000019
107.8 KB
90 CDS

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whole genome shotgun sequence
NZ_ADCB01000020
103.0 KB
95 CDS

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whole genome shotgun sequence
NZ_ADCB01000021
102.8 KB
92 CDS

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whole genome shotgun sequence
NZ_ADCB01000022
94.2 KB
83 CDS

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whole genome shotgun sequence
NZ_ADCB01000023
91.4 KB
85 CDS

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whole genome shotgun sequence
NZ_ADCB01000024
91.3 KB
87 CDS

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whole genome shotgun sequence
NZ_ADCB01000025
87.9 KB
77 CDS

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whole genome shotgun sequence
NZ_ADCB01000026
82.6 KB
76 CDS

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whole genome shotgun sequence
NZ_ADCB01000027
82.3 KB
85 CDS

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whole genome shotgun sequence
NZ_ADCB01000028
79.8 KB
70 CDS

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whole genome shotgun sequence
NZ_ADCB01000029
79.3 KB
79 CDS

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whole genome shotgun sequence
NZ_ADCB01000030
70.8 KB
72 CDS

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whole genome shotgun sequence
NZ_ADCB01000031
67.4 KB
61 CDS

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whole genome shotgun sequence
NZ_ADCB01000032
67.2 KB
43 CDS

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whole genome shotgun sequence
NZ_ADCB01000033
65.9 KB
63 CDS

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whole genome shotgun sequence
NZ_ADCB01000034
56.7 KB
58 CDS

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whole genome shotgun sequence
NZ_ADCB01000035
42.6 KB
37 CDS

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whole genome shotgun sequence
NZ_ADCB01000036
38.2 KB
38 CDS

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whole genome shotgun sequence
NZ_ADCB01000037
37.2 KB
29 CDS

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whole genome shotgun sequence
NZ_ADCB01000038
35.4 KB
28 CDS

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whole genome shotgun sequence
NZ_ADCB01000039
32.2 KB
28 CDS

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whole genome shotgun sequence
NZ_ADCB01000040
29.7 KB
26 CDS

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whole genome shotgun sequence
NZ_ADCB01000041
26.9 KB
25 CDS

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whole genome shotgun sequence
NZ_ADCB01000042
24.5 KB
29 CDS

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whole genome shotgun sequence
NZ_ADCB01000043
24.2 KB
19 CDS

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whole genome shotgun sequence
NZ_ADCB01000044
23.5 KB
19 CDS

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whole genome shotgun sequence
NZ_ADCB01000045
16.4 KB
16 CDS

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whole genome shotgun sequence
NZ_ADCB01000046
15.2 KB
12 CDS

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whole genome shotgun sequence
NZ_ADCB01000047
12.7 KB
4 CDS

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whole genome shotgun sequence
NZ_ADCB01000048
11.3 KB
10 CDS

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whole genome shotgun sequence
NZ_ADCB01000049
7.9 KB
5 CDS

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whole genome shotgun sequence
NZ_ADCB01000050
7.0 KB
7 CDS

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whole genome shotgun sequence
NZ_ADCB01000051
6.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ADCB01000052
5.3 KB
4 CDS

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whole genome shotgun sequence
NZ_ADCB01000053
4.4 KB
4 CDS

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whole genome shotgun sequence
NZ_ADCB01000054
4.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ADCB01000055
4.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ADCB01000056
3.8 KB
3 CDS

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whole genome shotgun sequence
NZ_ADCB01000057
3.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ADCB01000058
2.5 KB
0 CDS

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whole genome shotgun sequence
NZ_ADCB01000059
2.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ADCB01000060
2.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ADCB01000061
1.9 KB
1 CDS

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whole genome shotgun sequence
NZ_ADCB01000062
1.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ADCB01000063
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ADCB01000064
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ADCB01000065
976 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADCB01000066
968 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADCB01000067
968 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADCB01000068
907 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADCB01000069
906 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADCB01000070
873 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADCB01000071
794 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADCB01000072
742 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADCB01000073
727 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADCB01000074
715 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADCB01000075
694 bytes
0 CDS

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whole genome shotgun sequence
NZ_ADCB01000076
674 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADCB01000077
656 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADCB01000078
623 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADCB01000079
599 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADCB01000080
587 bytes
0 CDS

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whole genome shotgun sequence
NZ_ADCB01000081
563 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADCB01000082
558 bytes
0 CDS

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whole genome shotgun sequence
NZ_ADCB01000083
554 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADCB01000084
554 bytes
1 CDS

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Taxonomy

External Links

Acidovorax avenae subsp. avenae ATCC 19860

Search Genome

Sequences

PubMed Search for Acidovorax avenae subsp. avenae ATCC 19860

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