Aciduliprofundum boonei T469

J. Craig Venter Institute

Genome Size: 3.0 megabases, GC Content: 39.1%, Released Date: July 15, 2008 #14395

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000001
11.2 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000002
1.6 KB
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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000003
24.1 KB
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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000004
1.8 KB
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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000005
81.0 KB
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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000006
125.9 KB
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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000007
1.7 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000008
7.5 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000009
1.3 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000010
148.7 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000011
1.6 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000012
1.3 KB
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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000013
1.4 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000014
58.7 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000015
136.2 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000016
2.2 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000017
2.2 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000018
21.4 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000019
2.6 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000020
57.8 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000021
51.5 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000022
4.4 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000023
2.9 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000024
296.9 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000025
26.2 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000026
135.2 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000027
29.8 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000028
17.3 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000029
49.2 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000030
26.1 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000031
23.0 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000032
104.9 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000033
10.0 KB
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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000034
6.1 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000035
90.7 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000036
18.2 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000037
19.0 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000038
81.9 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000039
61.0 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000040
25.2 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000041
6.0 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000042
3.2 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000043
2.0 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000044
65.9 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000045
29.1 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000046
37.4 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000047
64.5 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000048
266.2 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000049
120.1 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000050
179.1 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000051
107.0 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000052
11.7 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000053
17.2 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000054
23.6 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000055
79.8 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000056
112.0 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000057
1.6 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000058
1.2 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000059
1.1 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000060
1.3 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000061
1.2 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000062
1.2 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSD01000063
1.1 KB
0 CDS

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References

Electron microscopy encounters with unusual thermophiles helps direct genomic analysis of Aciduliprofundum boonei
Reysenbach,A.L. and Flores,G.E. Geobiology 6 (3), 331-336 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Aciduliprofundum boonei T469

Search Genome

Sequences

References

Related Genomes