Acinetobacter baumannii AB307-0294

SUNY-Buffalo-CoE , Infectious Disease and Genomics, Center of Excellence (CoE) in Bioinformatics and Life Sciences

Genome Size: 3.8 megabases, GC Content: 39.0%, Released Date: Nov. 24, 2008 #16641

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_011595
3.6 MB
3451 CDS

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References

Comparative genome sequence analysis of multidrug-resistant Acinetobacter baumannii
Adams,M.D., Goglin,K., Molyneaux,N., Hujer,K.M., Lavender,H., Jamison,J.J., MacDonald,I.J., Martin,K.M., Russo,T., Campagnari,A.A., Hujer,A.M., Bonomo,R.A. and Gill,S.R. J. Bacteriol. 190 (24), 8053-8064 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Acinetobacter baumannii AB307-0294

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Sequences

References

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