Acinetobacter baumannii AB900

Infectious Disease and Genomics Laboratory, Center of Excellence in Bioinformatics and Life Sciences, SUNY-Buffalo

GC Content: 38.9%, Released Date: Dec. 5, 2008 #17681

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABXK01000001
341.2 KB
317 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000002
217.8 KB
197 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000003
216.8 KB
203 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000004
156.3 KB
147 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000005
135.9 KB
131 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000006
127.4 KB
119 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000007
125.7 KB
124 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000008
124.6 KB
122 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000009
123.6 KB
121 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000010
123.5 KB
127 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000011
116.9 KB
109 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000012
115.8 KB
126 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000013
114.5 KB
107 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000014
112.2 KB
126 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000015
108.0 KB
105 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000016
106.1 KB
89 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000017
96.9 KB
89 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000018
91.0 KB
87 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000019
86.7 KB
82 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000020
84.7 KB
96 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000021
83.6 KB
79 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000022
82.7 KB
73 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000023
81.3 KB
76 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000024
78.0 KB
80 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000025
73.0 KB
68 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000026
72.4 KB
76 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000027
59.2 KB
59 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000028
51.5 KB
49 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000029
50.5 KB
44 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000030
49.3 KB
48 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000031
45.3 KB
47 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000032
35.3 KB
36 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000033
32.7 KB
31 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000034
28.2 KB
31 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000035
26.6 KB
23 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000036
25.9 KB
28 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000037
25.9 KB
45 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000038
22.9 KB
27 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000039
21.0 KB
23 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000040
18.9 KB
19 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000041
16.2 KB
23 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000042
16.1 KB
13 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000043
12.1 KB
12 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000044
11.7 KB
8 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000045
10.3 KB
14 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000046
10.0 KB
10 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000047
7.2 KB
14 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000048
6.9 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000049
5.6 KB
6 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000050
5.0 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000051
3.6 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000052
3.4 KB
6 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000053
3.3 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000054
2.6 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000055
2.4 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000056
1.9 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000057
1.5 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000058
1.3 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000059
1.2 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000060
1.2 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000061
1.1 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000062
842 bytes
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000063
781 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000064
771 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000065
679 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000066
622 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000067
570 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXK01000068
524 bytes
1 CDS

Table view
Circular View
Artemis Viewer

References

Comparative genome sequence analysis of multidrug-resistant Acinetobacter baumannii
Adams,M.D., Goglin,K., Molyneaux,N., Hujer,K.M., Lavender,H., Jamison,J.J., MacDonald,I.J., Martin,K.M., Russo,T., Campagnari,A.A., Hujer,A.M., Bonomo,R.A. and Gill,S.R. J. Bacteriol. 190 (24), 8053-8064 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Acinetobacter baumannii AB900

Search Genome

Sequences

References

Related Genomes