Acinetobacter baumannii ACICU

CNR - National Research Council , Istituto Superiore di Sanita , National Research Council, Istitute for Biomedical Technologies, Italy, Segrate

Genome Size: 3.99 megabases, GC Content: 38.9%, Released Date: April 15, 2008 #16642

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_010611
3.7 MB
3667 CDS

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plasmid pACICU1
NC_010605
27.6 KB
28 CDS

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plasmid pACICU2
NC_010606
62.9 KB
64 CDS

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References

Whole-genome pyrosequencing of an epidemic multidrug-resistant Acinetobacter baumannii strain belonging to the European clone II group
Iacono,M., Villa,L., Fortini,D., Bordoni,R., Imperi,F., Bonnal,R.J., Sicheritz-Ponten,T., De Bellis,G., Visca,P., Cassone,A. and Carattoli,A. Antimicrob. Agents Chemother. 52 (7), 2616-2625 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Acinetobacter baumannii ACICU

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Sequences

References

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