Acinetobacter baumannii ATCC 17978

Yale Univ.

Genome Size: 4.02 megabases, GC Content: 38.9%, Released Date: March 1, 2007 #16643

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_009085
3.8 MB
3351 CDS

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plasmid pAB1
NC_009083
13.1 KB
11 CDS

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plasmid pAB2
NC_009084
11.0 KB
5 CDS

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References

New insights into Acinetobacter baumannii pathogenesis revealed by high-density pyrosequencing and transposon mutagenesis
Smith,M.G., Gianoulis,T.A., Pukatzki,S., Mekalanos,J.J., Ornston,L.N., Gerstein,M. and Snyder,M. Genes Dev. 21 (5), 601-614 (2007)
PubMed, PubGet, HubMed

Taxonomy

External Links

Acinetobacter baumannii ATCC 17978

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Sequences

References

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