Acinetobacter baumannii SDF

Genoscope

Genome Size: 3.46 megabases, GC Content: 39.1%, Released Date: Feb. 29, 2008 #16645

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_010400
3.3 MB
2913 CDS

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plasmid p1ABSDF
NC_010395
6.0 KB
8 CDS

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plasmid p2ABSDF
NC_010396
24.4 KB
30 CDS

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plasmid p3ABSDF
NC_010398
24.3 KB
24 CDS

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References

Comparative analysis of Acinetobacters: three genomes for three lifestyles
Vallenet,D., Nordmann,P., Barbe,V., Poirel,L., Mangenot,S., Bataille,E., Dossat,C., Gas,S., Kreimeyer,A., Lenoble,P., Oztas,S., Poulain,J., Segurens,B., Robert,C., Abergel,C., Claverie,J.M., Raoult,D., Medigue,C., Weissenbach,J. and Cruveiller,S. PLoS ONE 3 (3), E1805 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Acinetobacter baumannii SDF

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Sequences

References

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