Acinetobacter calcoaceticus RUH2202

Broad Institute

Genome Size: 3.84966 megabases, GC Content: 38.6%, Released Date: Aug. 26, 2008 #20116

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

genomic scaffold supercont1.1, whole genome shotgun sequence
NZ_GG704949
2.2 MB
2116 CDS

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genomic scaffold supercont1.2, whole genome shotgun sequence
NZ_GG704950
472.2 KB
455 CDS

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genomic scaffold supercont1.3, whole genome shotgun sequence
NZ_GG704951
453.7 KB
421 CDS

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genomic scaffold supercont1.4, whole genome shotgun sequence
NZ_GG704952
260.7 KB
246 CDS

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genomic scaffold supercont1.5, whole genome shotgun sequence
NZ_GG704953
167.3 KB
157 CDS

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genomic scaffold supercont1.6, whole genome shotgun sequence
NZ_GG704954
84.2 KB
79 CDS

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genomic scaffold supercont1.7, whole genome shotgun sequence
NZ_GG704955
50.3 KB
48 CDS

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genomic scaffold supercont1.8, whole genome shotgun sequence
NZ_GG704956
29.0 KB
33 CDS

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genomic scaffold supercont1.9, whole genome shotgun sequence
NZ_GG704957
5.5 KB
0 CDS

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genomic scaffold supercont1.10, whole genome shotgun sequence
NZ_GG704958
1.7 KB
1 CDS

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genomic scaffold supercont1.11, whole genome shotgun sequence
NZ_GG704959
1.6 KB
2 CDS

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genomic scaffold supercont1.12, whole genome shotgun sequence
NZ_GG704960
1.4 KB
3 CDS

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genomic scaffold supercont1.13, whole genome shotgun sequence
NZ_GG704961
1.4 KB
2 CDS

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genomic scaffold supercont1.14, whole genome shotgun sequence
NZ_GG704962
1.2 KB
1 CDS

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genomic scaffold supercont1.15, whole genome shotgun sequence
NZ_GG704963
1.1 KB
2 CDS

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Taxonomy

External Links

Acinetobacter calcoaceticus RUH2202

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Sequences

PubMed Search for Acinetobacter calcoaceticus RUH2202

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