Acinetobacter radioresistens SH164

Broad Institute

Genome Size: 3.13718 megabases, GC Content: 41.5%, Released Date: Aug. 26, 2008 #20121

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

genomic scaffold supercont1.1, whole genome shotgun sequence
NZ_GG705131
1.0 MB
966 CDS

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genomic scaffold supercont1.2, whole genome shotgun sequence
NZ_GG705132
932.4 KB
860 CDS

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genomic scaffold supercont1.3, whole genome shotgun sequence
NZ_GG705133
445.3 KB
401 CDS

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genomic scaffold supercont1.4, whole genome shotgun sequence
NZ_GG705134
357.5 KB
345 CDS

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genomic scaffold supercont1.5, whole genome shotgun sequence
NZ_GG705135
159.1 KB
151 CDS

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genomic scaffold supercont1.6, whole genome shotgun sequence
NZ_GG705136
56.6 KB
53 CDS

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genomic scaffold supercont1.7, whole genome shotgun sequence
NZ_GG705137
54.6 KB
52 CDS

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genomic scaffold supercont1.8, whole genome shotgun sequence
NZ_GG705138
18.6 KB
18 CDS

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genomic scaffold supercont1.9, whole genome shotgun sequence
NZ_GG705139
9.4 KB
11 CDS

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genomic scaffold supercont1.10, whole genome shotgun sequence
NZ_GG705140
4.4 KB
4 CDS

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genomic scaffold supercont1.11, whole genome shotgun sequence
NZ_GG705141
2.9 KB
3 CDS

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genomic scaffold supercont1.12, whole genome shotgun sequence
NZ_GG705142
2.1 KB
3 CDS

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genomic scaffold supercont1.13, whole genome shotgun sequence
NZ_GG705143
1.6 KB
1 CDS

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genomic scaffold supercont1.14, whole genome shotgun sequence
NZ_GG705144
1.2 KB
1 CDS

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genomic scaffold supercont1.15, whole genome shotgun sequence
NZ_GG705145
1.1 KB
1 CDS

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genomic scaffold supercont1.16, whole genome shotgun sequence
NZ_GG705146
1.1 KB
1 CDS

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genomic scaffold supercont1.17, whole genome shotgun sequence
NZ_GG705147
918 bytes
1 CDS

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genomic scaffold supercont1.18, whole genome shotgun sequence
NZ_GG705148
588 bytes
2 CDS

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Taxonomy

External Links

Acinetobacter radioresistens SH164

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Sequences

PubMed Search for Acinetobacter radioresistens SH164

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