Acinetobacter baylyi ADP1

Genoscope

Genome Size: 3.6 megabases, GC Content: 40.4%, Released Date: Oct. 30, 2004 #16646

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

Acinetobacter sp. ADP1, complete genome
NC_005966
3.4 MB
3307 CDS

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References

Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium
Barbe,V., Vallenet,D., Fonknechten,N., Kreimeyer,A., Oztas,S., Labarre,L., Cruveiller,S., Robert,C., Duprat,S., Wincker,P., Ornston,L.N., Weissenbach,J., Marliere,P., Cohen,G.N. and Medigue,C. Nucleic Acids Res. 32 (19), 5766-5779 (2004)
PubMed, PubGet, HubMed

Taxonomy

External Links

Acinetobacter baylyi ADP1

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Sequences

References

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