Actinobacillus pleuropneumoniae serovar 5b str. L20

National Research Council of Canada , Institute for Biological Sciences

Genome Size: 2.3 megabases, GC Content: 41.3%, Released Date: Feb. 23, 2007 #16647

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
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Allow mismatched bases

Sequences

Actinobacillus pleuropneumoniae L20, complete genome
NC_009053
2.2 MB
2012 CDS

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References

The complete genome sequence of Actinobacillus pleuropneumoniae L20 (serotype 5b)
Foote,S.J., Bosse,J.T., Bouevitch,A.B., Langford,P.R., Young,N.M. and Nash,J.H. J. Bacteriol. 190 (4), 1495-1496 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Actinobacillus pleuropneumoniae serovar 5b str. L20

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Sequences

References

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