Actinobacillus pleuropneumoniae serovar 13 str. N273

Huazhong Agricultural University

Genome Size: 2.3 megabases, Released Date: Sept. 13, 2010 #20128

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

contig00019, whole genome shotgun sequence
NZ_ADOM01000001
22.7 KB
23 CDS

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contig00014, whole genome shotgun sequence
NZ_ADOM01000002
53.0 KB
50 CDS

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contig00012, whole genome shotgun sequence
NZ_ADOM01000003
44.9 KB
43 CDS

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contig00063, whole genome shotgun sequence
NZ_ADOM01000004
26.6 KB
28 CDS

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contig00029, whole genome shotgun sequence
NZ_ADOM01000005
80.7 KB
80 CDS

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contig00263, whole genome shotgun sequence
NZ_ADOM01000006
7.1 KB
4 CDS

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contig00016, whole genome shotgun sequence
NZ_ADOM01000007
40.4 KB
38 CDS

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contig00472, whole genome shotgun sequence
NZ_ADOM01000008
73.6 KB
70 CDS

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contig00093, whole genome shotgun sequence
NZ_ADOM01000009
11.9 KB
15 CDS

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contig00004, whole genome shotgun sequence
NZ_ADOM01000010
178.1 KB
175 CDS

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contig00001, whole genome shotgun sequence
NZ_ADOM01000011
75.1 KB
87 CDS

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contig00064, whole genome shotgun sequence
NZ_ADOM01000012
70.3 KB
56 CDS

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contig00853, whole genome shotgun sequence
NZ_ADOM01000013
624 bytes
1 CDS

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contig00243, whole genome shotgun sequence
NZ_ADOM01000014
105.8 KB
93 CDS

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contig00087, whole genome shotgun sequence
NZ_ADOM01000015
2.9 KB
1 CDS

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contig00230, whole genome shotgun sequence
NZ_ADOM01000016
79.0 KB
85 CDS

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contig00237, whole genome shotgun sequence
NZ_ADOM01000017
162.4 KB
148 CDS

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contig00025, whole genome shotgun sequence
NZ_ADOM01000018
28.6 KB
30 CDS

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contig00074, whole genome shotgun sequence
NZ_ADOM01000019
1.2 KB
1 CDS

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contig00076, whole genome shotgun sequence
NZ_ADOM01000020
7.1 KB
4 CDS

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contig00084, whole genome shotgun sequence
NZ_ADOM01000021
50.7 KB
40 CDS

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contig00552, whole genome shotgun sequence
NZ_ADOM01000022
629 bytes
1 CDS

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contig00273, whole genome shotgun sequence
NZ_ADOM01000023
24.6 KB
18 CDS

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contig00081, whole genome shotgun sequence
NZ_ADOM01000024
41.5 KB
39 CDS

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contig00036, whole genome shotgun sequence
NZ_ADOM01000025
3.4 KB
2 CDS

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contig00522, whole genome shotgun sequence
NZ_ADOM01000026
86.4 KB
86 CDS

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contig00555, whole genome shotgun sequence
NZ_ADOM01000027
44.6 KB
44 CDS

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contig00032, whole genome shotgun sequence
NZ_ADOM01000028
82.6 KB
78 CDS

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contig00013, whole genome shotgun sequence
NZ_ADOM01000029
19.3 KB
23 CDS

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contig00078, whole genome shotgun sequence
NZ_ADOM01000030
3.3 KB
3 CDS

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contig00002, whole genome shotgun sequence
NZ_ADOM01000031
44.1 KB
40 CDS

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contig00466, whole genome shotgun sequence
NZ_ADOM01000032
34.6 KB
36 CDS

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contig00077, whole genome shotgun sequence
NZ_ADOM01000033
1.7 KB
0 CDS

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contig00035, whole genome shotgun sequence
NZ_ADOM01000034
24.6 KB
25 CDS

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contig00465, whole genome shotgun sequence
NZ_ADOM01000035
46.4 KB
41 CDS

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contig00026, whole genome shotgun sequence
NZ_ADOM01000036
8.1 KB
6 CDS

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contig00065, whole genome shotgun sequence
NZ_ADOM01000037
7.2 KB
5 CDS

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contig00021, whole genome shotgun sequence
NZ_ADOM01000038
33.5 KB
35 CDS

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contig00011, whole genome shotgun sequence
NZ_ADOM01000039
16.0 KB
17 CDS

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contig00442, whole genome shotgun sequence
NZ_ADOM01000040
10.1 KB
10 CDS

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contig00066, whole genome shotgun sequence
NZ_ADOM01000041
28.3 KB
33 CDS

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contig00242, whole genome shotgun sequence
NZ_ADOM01000042
46.2 KB
40 CDS

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contig00072, whole genome shotgun sequence
NZ_ADOM01000043
57.1 KB
65 CDS

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contig00003, whole genome shotgun sequence
NZ_ADOM01000044
46.2 KB
45 CDS

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contig00091, whole genome shotgun sequence
NZ_ADOM01000045
17.1 KB
18 CDS

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contig00094, whole genome shotgun sequence
NZ_ADOM01000046
55.9 KB
51 CDS

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contig00258, whole genome shotgun sequence
NZ_ADOM01000047
49.9 KB
66 CDS

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contig00017, whole genome shotgun sequence
NZ_ADOM01000048
30.1 KB
30 CDS

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contig00067, whole genome shotgun sequence
NZ_ADOM01000049
40.8 KB
38 CDS

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contig00275, whole genome shotgun sequence
NZ_ADOM01000050
25.0 KB
26 CDS

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contig00069, whole genome shotgun sequence
NZ_ADOM01000051
24.8 KB
19 CDS

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contig00041, whole genome shotgun sequence
NZ_ADOM01000052
68.0 KB
83 CDS

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contig00007, whole genome shotgun sequence
NZ_ADOM01000053
30.8 KB
31 CDS

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contig00554, whole genome shotgun sequence
NZ_ADOM01000054
2.6 KB
1 CDS

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contig00079, whole genome shotgun sequence
NZ_ADOM01000055
947 bytes
0 CDS

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contig00031, whole genome shotgun sequence
NZ_ADOM01000056
2.1 KB
1 CDS

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contig00361, whole genome shotgun sequence
NZ_ADOM01000057
2.3 KB
1 CDS

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contig00468, whole genome shotgun sequence
NZ_ADOM01000058
825 bytes
1 CDS

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contig00102, whole genome shotgun sequence
NZ_ADOM01000059
569 bytes
0 CDS

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contig00280, whole genome shotgun sequence
NZ_ADOM01000060
1.2 KB
1 CDS

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contig00262, whole genome shotgun sequence
NZ_ADOM01000061
879 bytes
1 CDS

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contig00278, whole genome shotgun sequence
NZ_ADOM01000062
3.1 KB
0 CDS

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contig00345, whole genome shotgun sequence
NZ_ADOM01000063
2.3 KB
6 CDS

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contig00083, whole genome shotgun sequence
NZ_ADOM01000064
594 bytes
0 CDS

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contig00401, whole genome shotgun sequence
NZ_ADOM01000065
2.2 KB
2 CDS

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contig00420, whole genome shotgun sequence
NZ_ADOM01000066
895 bytes
1 CDS

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contig00332, whole genome shotgun sequence
NZ_ADOM01000067
691 bytes
1 CDS

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contig00456, whole genome shotgun sequence
NZ_ADOM01000068
794 bytes
1 CDS

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References

Comparative genomic characterization of Actinobacillus pleuropneumoniae
Xu,Z., Chen,X., Li,L., Li,T., Wang,S., Chen,H. and Zhou,R. J. Bacteriol. (2010) In press
PubMed, PubGet, HubMed

Taxonomy

External Links

Actinobacillus pleuropneumoniae serovar 13 str. N273

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Sequences

References

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