Actinobacillus pleuropneumoniae serovar 2 str. 4226

Aarhus University, Denmark

Genome Size: 2.3 megabases, Released Date: Aug. 12, 2010 #20129

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

Contig1, whole genome shotgun sequence
NZ_ADXN01000001
364.9 KB
353 CDS

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Contig10, whole genome shotgun sequence
NZ_ADXN01000002
13.3 KB
11 CDS

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Contig11, whole genome shotgun sequence
NZ_ADXN01000003
68.6 KB
69 CDS

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Contig12, whole genome shotgun sequence
NZ_ADXN01000004
140.5 KB
128 CDS

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Contig13, whole genome shotgun sequence
NZ_ADXN01000005
19.3 KB
21 CDS

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Contig14, whole genome shotgun sequence
NZ_ADXN01000006
175.4 KB
150 CDS

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Contig15, whole genome shotgun sequence
NZ_ADXN01000007
36.3 KB
34 CDS

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Contig16, whole genome shotgun sequence
NZ_ADXN01000008
36.9 KB
36 CDS

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Contig17, whole genome shotgun sequence
NZ_ADXN01000009
222.2 KB
195 CDS

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Contig18, whole genome shotgun sequence
NZ_ADXN01000010
34.0 KB
32 CDS

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Contig19, whole genome shotgun sequence
NZ_ADXN01000011
64.0 KB
55 CDS

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Contig2, whole genome shotgun sequence
NZ_ADXN01000012
35.9 KB
32 CDS

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Contig20, whole genome shotgun sequence
NZ_ADXN01000013
112.8 KB
97 CDS

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Contig21, whole genome shotgun sequence
NZ_ADXN01000014
7.5 KB
5 CDS

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Contig22, whole genome shotgun sequence
NZ_ADXN01000015
13.6 KB
11 CDS

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Contig23, whole genome shotgun sequence
NZ_ADXN01000016
43.2 KB
37 CDS

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Contig24, whole genome shotgun sequence
NZ_ADXN01000017
29.1 KB
28 CDS

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Contig25, whole genome shotgun sequence
NZ_ADXN01000018
27.9 KB
29 CDS

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Contig26, whole genome shotgun sequence
NZ_ADXN01000019
17.3 KB
11 CDS

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Contig27, whole genome shotgun sequence
NZ_ADXN01000020
14.9 KB
13 CDS

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Contig28, whole genome shotgun sequence
NZ_ADXN01000021
15.3 KB
17 CDS

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Contig29, whole genome shotgun sequence
NZ_ADXN01000022
35.1 KB
28 CDS

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Contig3, whole genome shotgun sequence
NZ_ADXN01000023
266.5 KB
273 CDS

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Contig30, whole genome shotgun sequence
NZ_ADXN01000024
10.5 KB
6 CDS

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Contig31, whole genome shotgun sequence
NZ_ADXN01000025
6.5 KB
6 CDS

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Contig32, whole genome shotgun sequence
NZ_ADXN01000026
2.5 KB
2 CDS

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Contig33, whole genome shotgun sequence
NZ_ADXN01000027
3.2 KB
3 CDS

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Contig34, whole genome shotgun sequence
NZ_ADXN01000028
232 bytes
0 CDS

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Contig35, whole genome shotgun sequence
NZ_ADXN01000029
16.7 KB
18 CDS

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Contig36, whole genome shotgun sequence
NZ_ADXN01000030
82.5 KB
81 CDS

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Contig37, whole genome shotgun sequence
NZ_ADXN01000031
1.1 KB
1 CDS

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Contig38, whole genome shotgun sequence
NZ_ADXN01000032
3.6 KB
4 CDS

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Contig4, whole genome shotgun sequence
NZ_ADXN01000033
38.1 KB
37 CDS

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Contig5, whole genome shotgun sequence
NZ_ADXN01000034
169.0 KB
151 CDS

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Contig6, whole genome shotgun sequence
NZ_ADXN01000035
46.9 KB
42 CDS

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Contig7, whole genome shotgun sequence
NZ_ADXN01000036
25.9 KB
25 CDS

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Contig8, whole genome shotgun sequence
NZ_ADXN01000037
48.7 KB
45 CDS

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Contig9, whole genome shotgun sequence
NZ_ADXN01000038
10.5 KB
14 CDS

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References

Draft genome sequences of Actinobacillus pleuropneumoniae serotypes 2 and 6
Zhan,B., Angen,O., Hedegaard,J., Bendixen,C. and Panitz,F. J. Bacteriol. 192 (21), 5846-5847 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Actinobacillus pleuropneumoniae serovar 2 str. 4226

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Sequences

References

Related Genomes