Actinobacillus pleuropneumoniae serovar 2 str. S1536

Huazhong Agricultural University

Genome Size: 2.2 megabases, Released Date: Sept. 13, 2010 #20130

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

contig00008, whole genome shotgun sequence
NZ_ADOE01000001
37.8 KB
37 CDS

Table view
Circular View
Artemis Viewer

contig00002, whole genome shotgun sequence
NZ_ADOE01000002
43.6 KB
44 CDS

Table view
Circular View
Artemis Viewer

contig00024, whole genome shotgun sequence
NZ_ADOE01000003
70.5 KB
74 CDS

Table view
Circular View
Artemis Viewer

contig00031, whole genome shotgun sequence
NZ_ADOE01000004
35.6 KB
35 CDS

Table view
Circular View
Artemis Viewer

contig00007, whole genome shotgun sequence
NZ_ADOE01000005
47.3 KB
43 CDS

Table view
Circular View
Artemis Viewer

contig00005, whole genome shotgun sequence
NZ_ADOE01000006
38.7 KB
40 CDS

Table view
Circular View
Artemis Viewer

contig00068, whole genome shotgun sequence
NZ_ADOE01000007
92.0 KB
87 CDS

Table view
Circular View
Artemis Viewer

contig00030, whole genome shotgun sequence
NZ_ADOE01000008
64.5 KB
58 CDS

Table view
Circular View
Artemis Viewer

contig00066, whole genome shotgun sequence
NZ_ADOE01000009
23.2 KB
21 CDS

Table view
Circular View
Artemis Viewer

contig00023, whole genome shotgun sequence
NZ_ADOE01000010
84.5 KB
90 CDS

Table view
Circular View
Artemis Viewer

contig00021, whole genome shotgun sequence
NZ_ADOE01000011
57.7 KB
46 CDS

Table view
Circular View
Artemis Viewer

contig00025, whole genome shotgun sequence
NZ_ADOE01000012
52.1 KB
47 CDS

Table view
Circular View
Artemis Viewer

contig00063, whole genome shotgun sequence
NZ_ADOE01000013
9.5 KB
9 CDS

Table view
Circular View
Artemis Viewer

contig00026, whole genome shotgun sequence
NZ_ADOE01000014
40.5 KB
33 CDS

Table view
Circular View
Artemis Viewer

contig00035, whole genome shotgun sequence
NZ_ADOE01000015
783 bytes
1 CDS

Table view
Circular View
Artemis Viewer

contig00022, whole genome shotgun sequence
NZ_ADOE01000016
23.7 KB
26 CDS

Table view
Circular View
Artemis Viewer

contig00064, whole genome shotgun sequence
NZ_ADOE01000017
47.2 KB
45 CDS

Table view
Circular View
Artemis Viewer

contig00065, whole genome shotgun sequence
NZ_ADOE01000018
46.9 KB
40 CDS

Table view
Circular View
Artemis Viewer

contig00014, whole genome shotgun sequence
NZ_ADOE01000019
109.9 KB
99 CDS

Table view
Circular View
Artemis Viewer

contig00058, whole genome shotgun sequence
NZ_ADOE01000020
9.0 KB
10 CDS

Table view
Circular View
Artemis Viewer

contig00091, whole genome shotgun sequence
NZ_ADOE01000021
28.5 KB
29 CDS

Table view
Circular View
Artemis Viewer

contig00013, whole genome shotgun sequence
NZ_ADOE01000022
13.5 KB
15 CDS

Table view
Circular View
Artemis Viewer

contig00012, whole genome shotgun sequence
NZ_ADOE01000023
2.4 KB
1 CDS

Table view
Circular View
Artemis Viewer

contig00032, whole genome shotgun sequence
NZ_ADOE01000024
34.3 KB
29 CDS

Table view
Circular View
Artemis Viewer

contig00036, whole genome shotgun sequence
NZ_ADOE01000025
11.9 KB
8 CDS

Table view
Circular View
Artemis Viewer

contig00071, whole genome shotgun sequence
NZ_ADOE01000026
103.1 KB
107 CDS

Table view
Circular View
Artemis Viewer

contig00050, whole genome shotgun sequence
NZ_ADOE01000027
113.5 KB
112 CDS

Table view
Circular View
Artemis Viewer

contig00016, whole genome shotgun sequence
NZ_ADOE01000028
44.5 KB
46 CDS

Table view
Circular View
Artemis Viewer

contig00062, whole genome shotgun sequence
NZ_ADOE01000029
38.0 KB
35 CDS

Table view
Circular View
Artemis Viewer

contig00067, whole genome shotgun sequence
NZ_ADOE01000030
22.4 KB
27 CDS

Table view
Circular View
Artemis Viewer

contig00059, whole genome shotgun sequence
NZ_ADOE01000031
20.9 KB
20 CDS

Table view
Circular View
Artemis Viewer

contig00041, whole genome shotgun sequence
NZ_ADOE01000032
65.6 KB
61 CDS

Table view
Circular View
Artemis Viewer

contig00040, whole genome shotgun sequence
NZ_ADOE01000033
1.6 KB
0 CDS

Table view
Circular View
Artemis Viewer

contig00029, whole genome shotgun sequence
NZ_ADOE01000034
31.6 KB
31 CDS

Table view
Circular View
Artemis Viewer

contig00009, whole genome shotgun sequence
NZ_ADOE01000035
46.1 KB
41 CDS

Table view
Circular View
Artemis Viewer

contig00049, whole genome shotgun sequence
NZ_ADOE01000036
7.9 KB
6 CDS

Table view
Circular View
Artemis Viewer

contig00051, whole genome shotgun sequence
NZ_ADOE01000037
35.0 KB
35 CDS

Table view
Circular View
Artemis Viewer

contig00015, whole genome shotgun sequence
NZ_ADOE01000038
15.9 KB
16 CDS

Table view
Circular View
Artemis Viewer

contig00011, whole genome shotgun sequence
NZ_ADOE01000039
10.1 KB
10 CDS

Table view
Circular View
Artemis Viewer

contig00010, whole genome shotgun sequence
NZ_ADOE01000040
28.0 KB
33 CDS

Table view
Circular View
Artemis Viewer

contig00033, whole genome shotgun sequence
NZ_ADOE01000041
103.5 KB
104 CDS

Table view
Circular View
Artemis Viewer

contig00044, whole genome shotgun sequence
NZ_ADOE01000042
157.9 KB
178 CDS

Table view
Circular View
Artemis Viewer

contig00045, whole genome shotgun sequence
NZ_ADOE01000043
8.7 KB
10 CDS

Table view
Circular View
Artemis Viewer

contig00048, whole genome shotgun sequence
NZ_ADOE01000044
30.0 KB
30 CDS

Table view
Circular View
Artemis Viewer

contig00004, whole genome shotgun sequence
NZ_ADOE01000045
56.9 KB
52 CDS

Table view
Circular View
Artemis Viewer

contig00020, whole genome shotgun sequence
NZ_ADOE01000046
8.1 KB
11 CDS

Table view
Circular View
Artemis Viewer

contig00076, whole genome shotgun sequence
NZ_ADOE01000047
70.6 KB
75 CDS

Table view
Circular View
Artemis Viewer

contig00055, whole genome shotgun sequence
NZ_ADOE01000048
92.7 KB
93 CDS

Table view
Circular View
Artemis Viewer

contig00003, whole genome shotgun sequence
NZ_ADOE01000049
1.5 KB
1 CDS

Table view
Circular View
Artemis Viewer

contig00027, whole genome shotgun sequence
NZ_ADOE01000050
18.6 KB
19 CDS

Table view
Circular View
Artemis Viewer

contig00084, whole genome shotgun sequence
NZ_ADOE01000051
681 bytes
1 CDS

Table view
Circular View
Artemis Viewer

contig00001, whole genome shotgun sequence
NZ_ADOE01000052
1.9 KB
1 CDS

Table view
Circular View
Artemis Viewer

contig00090, whole genome shotgun sequence
NZ_ADOE01000053
1.2 KB
1 CDS

Table view
Circular View
Artemis Viewer

contig00056, whole genome shotgun sequence
NZ_ADOE01000054
1.2 KB
1 CDS

Table view
Circular View
Artemis Viewer

contig00039, whole genome shotgun sequence
NZ_ADOE01000055
3.1 KB
0 CDS

Table view
Circular View
Artemis Viewer

contig00037, whole genome shotgun sequence
NZ_ADOE01000056
683 bytes
1 CDS

Table view
Circular View
Artemis Viewer

References

Comparative genomic characterization of Actinobacillus pleuropneumoniae
Xu,Z., Chen,X., Li,L., Li,T., Wang,S., Chen,H. and Zhou,R. J. Bacteriol. (2010) In press
PubMed, PubGet, HubMed

Taxonomy

External Links

Actinobacillus pleuropneumoniae serovar 2 str. S1536

Search Genome

Sequences

References

Related Genomes