Actinobacillus pleuropneumoniae serovar 6 str. Femo

Aarhus University, Denmark

Genome Size: 2.4 megabases, Released Date: Aug. 12, 2010 #20132

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

Contig1, whole genome shotgun sequence
NZ_ADXO01000001
9.4 KB
5 CDS

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Contig10, whole genome shotgun sequence
NZ_ADXO01000002
112.0 KB
107 CDS

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Contig11, whole genome shotgun sequence
NZ_ADXO01000003
42.2 KB
32 CDS

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Contig12, whole genome shotgun sequence
NZ_ADXO01000004
93.0 KB
87 CDS

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Contig13, whole genome shotgun sequence
NZ_ADXO01000005
178.2 KB
156 CDS

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Contig14, whole genome shotgun sequence
NZ_ADXO01000006
20.9 KB
18 CDS

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Contig15, whole genome shotgun sequence
NZ_ADXO01000007
299.5 KB
308 CDS

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Contig16, whole genome shotgun sequence
NZ_ADXO01000008
48.2 KB
42 CDS

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Contig17, whole genome shotgun sequence
NZ_ADXO01000009
47.8 KB
51 CDS

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Contig18, whole genome shotgun sequence
NZ_ADXO01000010
88.2 KB
93 CDS

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Contig19, whole genome shotgun sequence
NZ_ADXO01000011
60.9 KB
49 CDS

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Contig2, whole genome shotgun sequence
NZ_ADXO01000012
310.6 KB
287 CDS

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Contig20, whole genome shotgun sequence
NZ_ADXO01000013
29.1 KB
29 CDS

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Contig21, whole genome shotgun sequence
NZ_ADXO01000014
35.1 KB
34 CDS

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Contig22, whole genome shotgun sequence
NZ_ADXO01000015
48.4 KB
56 CDS

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Contig23, whole genome shotgun sequence
NZ_ADXO01000016
47.2 KB
40 CDS

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Contig24, whole genome shotgun sequence
NZ_ADXO01000017
27.2 KB
23 CDS

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Contig25, whole genome shotgun sequence
NZ_ADXO01000018
21.0 KB
19 CDS

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Contig26, whole genome shotgun sequence
NZ_ADXO01000019
12.0 KB
13 CDS

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Contig27, whole genome shotgun sequence
NZ_ADXO01000020
45.9 KB
40 CDS

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Contig28, whole genome shotgun sequence
NZ_ADXO01000021
18.0 KB
18 CDS

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Contig29, whole genome shotgun sequence
NZ_ADXO01000022
6.3 KB
6 CDS

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Contig3, whole genome shotgun sequence
NZ_ADXO01000023
135.6 KB
113 CDS

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Contig30, whole genome shotgun sequence
NZ_ADXO01000024
8.7 KB
5 CDS

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Contig31, whole genome shotgun sequence
NZ_ADXO01000025
33.2 KB
32 CDS

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Contig32, whole genome shotgun sequence
NZ_ADXO01000026
18.0 KB
17 CDS

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Contig33, whole genome shotgun sequence
NZ_ADXO01000027
1.5 KB
0 CDS

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Contig34, whole genome shotgun sequence
NZ_ADXO01000028
1.7 KB
0 CDS

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Contig35, whole genome shotgun sequence
NZ_ADXO01000029
5.6 KB
3 CDS

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Contig36, whole genome shotgun sequence
NZ_ADXO01000030
41.7 KB
35 CDS

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Contig4, whole genome shotgun sequence
NZ_ADXO01000031
162.7 KB
155 CDS

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Contig5, whole genome shotgun sequence
NZ_ADXO01000032
32.5 KB
31 CDS

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Contig6, whole genome shotgun sequence
NZ_ADXO01000033
94.4 KB
89 CDS

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Contig7, whole genome shotgun sequence
NZ_ADXO01000034
15.2 KB
21 CDS

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Contig8, whole genome shotgun sequence
NZ_ADXO01000035
107.7 KB
99 CDS

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Contig9, whole genome shotgun sequence
NZ_ADXO01000036
60.3 KB
55 CDS

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References

Draft genome sequences of Actinobacillus pleuropneumoniae serotypes 2 and 6
Zhan,B., Angen,O., Hedegaard,J., Bendixen,C. and Panitz,F. J. Bacteriol. 192 (21), 5846-5847 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Actinobacillus pleuropneumoniae serovar 6 str. Femo

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Sequences

References

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