Actinobacillus pleuropneumoniae serovar 6 str. Femo

Huazhong Agricultural University

Genome Size: 2.3 megabases, Released Date: Sept. 13, 2010 #20133

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

contig00008, whole genome shotgun sequence
NZ_ADOG01000001
112.1 KB
107 CDS

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contig00062, whole genome shotgun sequence
NZ_ADOG01000002
45.9 KB
44 CDS

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contig00001, whole genome shotgun sequence
NZ_ADOG01000003
69.3 KB
68 CDS

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contig00050, whole genome shotgun sequence
NZ_ADOG01000004
39.9 KB
41 CDS

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contig00017, whole genome shotgun sequence
NZ_ADOG01000005
47.4 KB
42 CDS

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contig00011, whole genome shotgun sequence
NZ_ADOG01000006
53.5 KB
50 CDS

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contig00063, whole genome shotgun sequence
NZ_ADOG01000007
179.4 KB
163 CDS

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contig00059, whole genome shotgun sequence
NZ_ADOG01000008
54.3 KB
58 CDS

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contig00022, whole genome shotgun sequence
NZ_ADOG01000009
111.3 KB
109 CDS

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contig00020, whole genome shotgun sequence
NZ_ADOG01000010
48.7 KB
45 CDS

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contig00026, whole genome shotgun sequence
NZ_ADOG01000011
191.7 KB
175 CDS

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contig00029, whole genome shotgun sequence
NZ_ADOG01000012
160.9 KB
153 CDS

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contig00024, whole genome shotgun sequence
NZ_ADOG01000013
29.0 KB
32 CDS

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contig00027, whole genome shotgun sequence
NZ_ADOG01000014
53.2 KB
49 CDS

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contig00006, whole genome shotgun sequence
NZ_ADOG01000015
36.5 KB
26 CDS

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contig00035, whole genome shotgun sequence
NZ_ADOG01000016
45.4 KB
41 CDS

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contig00065, whole genome shotgun sequence
NZ_ADOG01000017
103.6 KB
101 CDS

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contig00046, whole genome shotgun sequence
NZ_ADOG01000018
27.1 KB
30 CDS

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contig00042, whole genome shotgun sequence
NZ_ADOG01000019
82.6 KB
78 CDS

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contig00053, whole genome shotgun sequence
NZ_ADOG01000020
74.5 KB
71 CDS

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contig00031, whole genome shotgun sequence
NZ_ADOG01000021
34.5 KB
36 CDS

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contig00049, whole genome shotgun sequence
NZ_ADOG01000022
1.7 KB
0 CDS

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contig00028, whole genome shotgun sequence
NZ_ADOG01000023
31.7 KB
31 CDS

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contig00048, whole genome shotgun sequence
NZ_ADOG01000024
14.2 KB
14 CDS

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contig00047, whole genome shotgun sequence
NZ_ADOG01000025
28.6 KB
26 CDS

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contig00074, whole genome shotgun sequence
NZ_ADOG01000026
8.2 KB
6 CDS

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contig00004, whole genome shotgun sequence
NZ_ADOG01000027
34.9 KB
33 CDS

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contig00083, whole genome shotgun sequence
NZ_ADOG01000028
16.0 KB
16 CDS

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contig00057, whole genome shotgun sequence
NZ_ADOG01000029
10.2 KB
12 CDS

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contig00003, whole genome shotgun sequence
NZ_ADOG01000030
10.6 KB
14 CDS

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contig00039, whole genome shotgun sequence
NZ_ADOG01000031
794 bytes
2 CDS

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contig00012, whole genome shotgun sequence
NZ_ADOG01000032
16.9 KB
19 CDS

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contig00010, whole genome shotgun sequence
NZ_ADOG01000033
37.9 KB
35 CDS

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contig00005, whole genome shotgun sequence
NZ_ADOG01000034
60.6 KB
64 CDS

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contig00013, whole genome shotgun sequence
NZ_ADOG01000035
5.6 KB
9 CDS

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contig00009, whole genome shotgun sequence
NZ_ADOG01000036
34.1 KB
37 CDS

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contig00045, whole genome shotgun sequence
NZ_ADOG01000037
130.1 KB
146 CDS

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contig00030, whole genome shotgun sequence
NZ_ADOG01000038
30.1 KB
30 CDS

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contig00033, whole genome shotgun sequence
NZ_ADOG01000039
24.7 KB
21 CDS

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contig00075, whole genome shotgun sequence
NZ_ADOG01000040
41.6 KB
45 CDS

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contig00066, whole genome shotgun sequence
NZ_ADOG01000041
88.4 KB
97 CDS

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contig00040, whole genome shotgun sequence
NZ_ADOG01000042
15.0 KB
25 CDS

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contig00036, whole genome shotgun sequence
NZ_ADOG01000043
961 bytes
2 CDS

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contig00021, whole genome shotgun sequence
NZ_ADOG01000044
3.3 KB
3 CDS

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contig00019, whole genome shotgun sequence
NZ_ADOG01000045
1.2 KB
1 CDS

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contig00023, whole genome shotgun sequence
NZ_ADOG01000046
995 bytes
1 CDS

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contig00014, whole genome shotgun sequence
NZ_ADOG01000047
526 bytes
0 CDS

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contig00002, whole genome shotgun sequence
NZ_ADOG01000048
1.6 KB
1 CDS

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contig00070, whole genome shotgun sequence
NZ_ADOG01000049
884 bytes
1 CDS

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contig00071, whole genome shotgun sequence
NZ_ADOG01000050
3.3 KB
0 CDS

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contig00058, whole genome shotgun sequence
NZ_ADOG01000051
736 bytes
1 CDS

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contig00034, whole genome shotgun sequence
NZ_ADOG01000052
709 bytes
0 CDS

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References

Comparative genomic characterization of Actinobacillus pleuropneumoniae
Xu,Z., Chen,X., Li,L., Li,T., Wang,S., Chen,H. and Zhou,R. J. Bacteriol. (2010) In press
PubMed, PubGet, HubMed

Taxonomy

External Links

Actinobacillus pleuropneumoniae serovar 6 str. Femo

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Sequences

References

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