Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261

Huazhong Agricultural University

Genome Size: 2.3 megabases, Released Date: Sept. 13, 2010 #20134

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

contig00012, whole genome shotgun sequence
NZ_ADOI01000001
81.1 KB
77 CDS

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contig00030, whole genome shotgun sequence
NZ_ADOI01000002
44.0 KB
45 CDS

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contig00060, whole genome shotgun sequence
NZ_ADOI01000003
106.6 KB
109 CDS

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contig00041, whole genome shotgun sequence
NZ_ADOI01000004
6.9 KB
4 CDS

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contig00009, whole genome shotgun sequence
NZ_ADOI01000005
6.8 KB
5 CDS

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contig00007, whole genome shotgun sequence
NZ_ADOI01000006
4.3 KB
8 CDS

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contig00061, whole genome shotgun sequence
NZ_ADOI01000007
29.6 KB
27 CDS

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contig00023, whole genome shotgun sequence
NZ_ADOI01000008
77.1 KB
72 CDS

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contig00043, whole genome shotgun sequence
NZ_ADOI01000009
29.4 KB
27 CDS

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contig00032, whole genome shotgun sequence
NZ_ADOI01000010
99.6 KB
95 CDS

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contig00020, whole genome shotgun sequence
NZ_ADOI01000011
3.2 KB
4 CDS

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contig00010, whole genome shotgun sequence
NZ_ADOI01000012
7.1 KB
3 CDS

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contig00028, whole genome shotgun sequence
NZ_ADOI01000013
2.0 KB
1 CDS

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contig00004, whole genome shotgun sequence
NZ_ADOI01000014
36.3 KB
34 CDS

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contig00015, whole genome shotgun sequence
NZ_ADOI01000015
18.9 KB
32 CDS

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contig00022, whole genome shotgun sequence
NZ_ADOI01000016
11.2 KB
17 CDS

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contig00019, whole genome shotgun sequence
NZ_ADOI01000017
116.9 KB
110 CDS

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contig00050, whole genome shotgun sequence
NZ_ADOI01000018
51.7 KB
46 CDS

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contig00077, whole genome shotgun sequence
NZ_ADOI01000019
51.1 KB
43 CDS

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contig00017, whole genome shotgun sequence
NZ_ADOI01000020
20.5 KB
22 CDS

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contig00006, whole genome shotgun sequence
NZ_ADOI01000021
19.8 KB
22 CDS

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contig00069, whole genome shotgun sequence
NZ_ADOI01000022
26.8 KB
25 CDS

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contig00016, whole genome shotgun sequence
NZ_ADOI01000023
24.2 KB
20 CDS

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contig00021, whole genome shotgun sequence
NZ_ADOI01000024
24.7 KB
24 CDS

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contig00026, whole genome shotgun sequence
NZ_ADOI01000025
2.8 KB
4 CDS

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contig00008, whole genome shotgun sequence
NZ_ADOI01000026
14.8 KB
14 CDS

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contig00039, whole genome shotgun sequence
NZ_ADOI01000027
60.9 KB
56 CDS

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contig00024, whole genome shotgun sequence
NZ_ADOI01000028
75.0 KB
89 CDS

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contig00046, whole genome shotgun sequence
NZ_ADOI01000029
75.8 KB
64 CDS

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contig00064, whole genome shotgun sequence
NZ_ADOI01000030
11.5 KB
8 CDS

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contig00067, whole genome shotgun sequence
NZ_ADOI01000031
699 bytes
1 CDS

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contig00040, whole genome shotgun sequence
NZ_ADOI01000032
1.4 KB
0 CDS

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contig00013, whole genome shotgun sequence
NZ_ADOI01000033
41.9 KB
40 CDS

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contig00036, whole genome shotgun sequence
NZ_ADOI01000034
11.7 KB
11 CDS

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contig00097, whole genome shotgun sequence
NZ_ADOI01000035
13.8 KB
13 CDS

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contig00044, whole genome shotgun sequence
NZ_ADOI01000036
26.2 KB
29 CDS

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contig00018, whole genome shotgun sequence
NZ_ADOI01000037
218.4 KB
214 CDS

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contig00056, whole genome shotgun sequence
NZ_ADOI01000038
6.0 KB
7 CDS

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contig00027, whole genome shotgun sequence
NZ_ADOI01000039
13.0 KB
13 CDS

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contig00011, whole genome shotgun sequence
NZ_ADOI01000040
65.6 KB
64 CDS

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contig00054, whole genome shotgun sequence
NZ_ADOI01000041
1.6 KB
0 CDS

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contig00099, whole genome shotgun sequence
NZ_ADOI01000042
35.1 KB
32 CDS

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contig00053, whole genome shotgun sequence
NZ_ADOI01000043
29.1 KB
28 CDS

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contig00073, whole genome shotgun sequence
NZ_ADOI01000044
8.2 KB
6 CDS

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contig00072, whole genome shotgun sequence
NZ_ADOI01000045
34.8 KB
34 CDS

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contig00080, whole genome shotgun sequence
NZ_ADOI01000046
16.2 KB
16 CDS

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contig00002, whole genome shotgun sequence
NZ_ADOI01000047
10.3 KB
10 CDS

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contig00062, whole genome shotgun sequence
NZ_ADOI01000048
28.3 KB
33 CDS

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contig00033, whole genome shotgun sequence
NZ_ADOI01000049
103.2 KB
107 CDS

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contig00035, whole genome shotgun sequence
NZ_ADOI01000050
77.1 KB
84 CDS

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contig00045, whole genome shotgun sequence
NZ_ADOI01000051
74.4 KB
86 CDS

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contig00094, whole genome shotgun sequence
NZ_ADOI01000052
30.2 KB
29 CDS

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contig00047, whole genome shotgun sequence
NZ_ADOI01000053
66.0 KB
66 CDS

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contig00003, whole genome shotgun sequence
NZ_ADOI01000054
118.0 KB
127 CDS

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contig00052, whole genome shotgun sequence
NZ_ADOI01000055
2.9 KB
3 CDS

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contig00038, whole genome shotgun sequence
NZ_ADOI01000056
1.8 KB
1 CDS

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contig00066, whole genome shotgun sequence
NZ_ADOI01000057
2.4 KB
1 CDS

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contig00025, whole genome shotgun sequence
NZ_ADOI01000058
7.2 KB
9 CDS

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contig00042, whole genome shotgun sequence
NZ_ADOI01000059
14.5 KB
13 CDS

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contig00083, whole genome shotgun sequence
NZ_ADOI01000060
826 bytes
1 CDS

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contig00049, whole genome shotgun sequence
NZ_ADOI01000061
2.8 KB
0 CDS

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contig00001, whole genome shotgun sequence
NZ_ADOI01000062
1.2 KB
1 CDS

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contig00058, whole genome shotgun sequence
NZ_ADOI01000063
3.1 KB
0 CDS

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contig00029, whole genome shotgun sequence
NZ_ADOI01000064
1000 bytes
1 CDS

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contig00059, whole genome shotgun sequence
NZ_ADOI01000065
624 bytes
1 CDS

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References

Comparative genomic characterization of Actinobacillus pleuropneumoniae
Xu,Z., Chen,X., Li,L., Li,T., Wang,S., Chen,H. and Zhou,R. J. Bacteriol. (2010) In press
PubMed, PubGet, HubMed

Taxonomy

External Links

Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261

Search Genome

Sequences

References

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