• Summary page

Sequences

• whole genome shotgun sequence
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Taxonomy

cellular organisms
» Bacteria
» Actinobacteria
» Actinobacteria (class)
» Actinobacteridae
» Actinomycetales
» Actinomycineae
» Actinomycetaceae
» Actinomyces
» Actinomyces urogenitalis

Actinomyces urogenitalis DSM 15434

HMPREF0058_0025 - ABC superfamily ATP binding cassette transporter

Analysis Tools

View alignment of region with nucmer promer

Design primers within region using Primer3Plus

View region in Artemis

Retrieve HMPREF0058_0025 nucleotide sequence in FASTA format

Retrieve HMPREF0058_0025 protein sequence in FASTA format

Retrieve HMPREF0058_0025 nucleotide sequence with 10 50 100 200 400 600 800 1000 2000 bp. flanking sequence
Include translation of coding sequence
Include complementary strand.

Run NCBI BLASTP PSI-BLAST against the Non-redundant protein sequences (nr) SwissProt Protein Data Bank (PDB) database using HMPREF0058_0025 protein sequence
(optional - restrict search to taxonomic group: root cellular organisms Bacteria Actinobacteria Actinobacteria (class) Actinobacteridae Actinomycetales Actinomycineae Actinomycetaceae Actinomyces Actinomyces urogenitalis )

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Annotation

Product:

ABC superfamily ATP binding cassette transporter

GenBank ID: ZP_03926033.1

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Related Articles

Search PubMed Google Scholar HighWire Scirus CrossRef pilot for

PubMed search results for ABC superfamily ATP binding cassette transporter AND Actinomyces urogenitalis