Agrobacterium tumefaciens str. C58

Cereon , U. Washington

Genome Size: 5.65 megabases, GC Content: 59.0%, Released Date: Dec. 18, 2001 #16658

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

chromosome circular
NC_003062
2.7 MB
2765 CDS

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chromosome linear
NC_003063
2.0 MB
1851 CDS

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plasmid At
NC_003064
530.1 KB
542 CDS

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plasmid Ti
NC_003065
209.2 KB
197 CDS

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References

Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58
Goodner,B., Hinkle,G., Gattung,S., Miller,N., Blanchard,M., Qurollo,B., Goldman,B.S., Cao,Y., Askenazi,M., Halling,C., Mullin,L., Houmiel,K., Gordon,J., Vaudin,M., Iartchouk,O., Epp,A., Liu,F., Wollam,C., Allinger,M., Doughty,D., Scott,C., Lappas,C., Markelz,B., Flanagan,C., Crowell,C., Gurson,J., Lomo,C., Sear,C., Strub,G., Cielo,C. and Slater,S. Science 294 (5550), 2323-2328 (2001)
PubMed, PubGet, HubMed
The genome of the natural genetic engineer Agrobacterium tumefaciens C58
Wood,D.W., Setubal,J.C., Kaul,R., Monks,D.E., Kitajima,J.P., Okura,V.K., Zhou,Y., Chen,L., Wood,G.E., Almeida,N.F. Jr., Woo,L., Chen,Y., Paulsen,I.T., Eisen,J.A., Karp,P.D., Bovee,D. Sr., Chapman,P., Clendenning,J., Deatherage,G., Gillet,W., Grant,C., Kutyavin,T., Levy,R., Li,M.J., McClelland,E., Palmieri,A., Raymond,C., Rouse,G., Saenphimmachak,C., Wu,Z., Romero,P., Gordon,D., Zhang,S., Yoo,H., Tao,Y., Biddle,P., Jung,M., Krespan,W., Perry,M., Gordon-Kamm,B., Liao,L., Kim,S., Hendrick,C., Zhao,Z.Y., Dolan,M., Chumley,F., Tingey,S.V., Tomb,J.F., Gordon,M.P., Olson,M.V. and Nester,E.W. Science 294 (5550), 2317-2323 (2001)
PubMed, PubGet, HubMed

Taxonomy

External Links

Agrobacterium tumefaciens str. C58

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Sequences

References

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