Algoriphagus sp. PR1

J. Craig Venter Institute

GC Content: 38.7%, Released Date: March 6, 2007 #17692

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAXU01000001
988.6 KB
866 CDS

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whole genome shotgun sequence
NZ_AAXU01000002
891.3 KB
830 CDS

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whole genome shotgun sequence
NZ_AAXU01000003
806.6 KB
719 CDS

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whole genome shotgun sequence
NZ_AAXU01000004
666.7 KB
618 CDS

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whole genome shotgun sequence
NZ_AAXU01000005
448.6 KB
422 CDS

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whole genome shotgun sequence
NZ_AAXU01000006
322.4 KB
258 CDS

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whole genome shotgun sequence
NZ_AAXU01000007
160.6 KB
154 CDS

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whole genome shotgun sequence
NZ_AAXU01000008
158.7 KB
146 CDS

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whole genome shotgun sequence
NZ_AAXU01000009
122.3 KB
109 CDS

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whole genome shotgun sequence
NZ_AAXU01000010
71.5 KB
64 CDS

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whole genome shotgun sequence
NZ_AAXU01000011
25.2 KB
25 CDS

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whole genome shotgun sequence
NZ_AAXU01000012
1.7 KB
4 CDS

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Taxonomy

External Links

Algoriphagus sp. PR1

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Sequences

PubMed Search for Algoriphagus sp. PR1

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