Alicyclobacillus acidocaldarius LAA1

DOE Joint Genome Institute

GC Content: 61.7%, Released Date: Dec. 17, 2008 #17693

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACCS01000001
236.1 KB
223 CDS

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whole genome shotgun sequence
NZ_ACCS01000002
162.9 KB
153 CDS

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whole genome shotgun sequence
NZ_ACCS01000003
136.6 KB
149 CDS

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whole genome shotgun sequence
NZ_ACCS01000004
131.1 KB
135 CDS

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whole genome shotgun sequence
NZ_ACCS01000005
129.2 KB
121 CDS

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whole genome shotgun sequence
NZ_ACCS01000006
120.5 KB
128 CDS

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whole genome shotgun sequence
NZ_ACCS01000007
118.3 KB
112 CDS

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whole genome shotgun sequence
NZ_ACCS01000008
117.1 KB
121 CDS

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whole genome shotgun sequence
NZ_ACCS01000009
111.0 KB
119 CDS

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whole genome shotgun sequence
NZ_ACCS01000010
109.4 KB
112 CDS

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whole genome shotgun sequence
NZ_ACCS01000011
73.3 KB
97 CDS

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whole genome shotgun sequence
NZ_ACCS01000012
70.6 KB
83 CDS

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whole genome shotgun sequence
NZ_ACCS01000013
66.2 KB
74 CDS

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whole genome shotgun sequence
NZ_ACCS01000014
60.6 KB
66 CDS

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whole genome shotgun sequence
NZ_ACCS01000015
58.7 KB
75 CDS

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whole genome shotgun sequence
NZ_ACCS01000016
57.2 KB
65 CDS

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whole genome shotgun sequence
NZ_ACCS01000017
56.7 KB
54 CDS

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whole genome shotgun sequence
NZ_ACCS01000018
55.0 KB
56 CDS

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whole genome shotgun sequence
NZ_ACCS01000019
53.7 KB
58 CDS

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whole genome shotgun sequence
NZ_ACCS01000020
53.3 KB
53 CDS

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whole genome shotgun sequence
NZ_ACCS01000021
51.7 KB
55 CDS

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whole genome shotgun sequence
NZ_ACCS01000022
50.4 KB
46 CDS

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whole genome shotgun sequence
NZ_ACCS01000023
49.6 KB
50 CDS

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whole genome shotgun sequence
NZ_ACCS01000024
45.1 KB
56 CDS

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whole genome shotgun sequence
NZ_ACCS01000025
45.0 KB
55 CDS

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whole genome shotgun sequence
NZ_ACCS01000026
43.1 KB
52 CDS

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whole genome shotgun sequence
NZ_ACCS01000027
41.0 KB
65 CDS

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whole genome shotgun sequence
NZ_ACCS01000028
38.3 KB
32 CDS

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whole genome shotgun sequence
NZ_ACCS01000029
37.5 KB
36 CDS

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whole genome shotgun sequence
NZ_ACCS01000030
37.1 KB
49 CDS

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whole genome shotgun sequence
NZ_ACCS01000031
36.0 KB
45 CDS

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whole genome shotgun sequence
NZ_ACCS01000032
34.3 KB
28 CDS

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whole genome shotgun sequence
NZ_ACCS01000033
32.7 KB
28 CDS

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whole genome shotgun sequence
NZ_ACCS01000034
30.9 KB
26 CDS

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whole genome shotgun sequence
NZ_ACCS01000035
29.2 KB
33 CDS

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whole genome shotgun sequence
NZ_ACCS01000036
29.0 KB
32 CDS

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whole genome shotgun sequence
NZ_ACCS01000037
28.1 KB
28 CDS

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whole genome shotgun sequence
NZ_ACCS01000038
27.9 KB
32 CDS

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whole genome shotgun sequence
NZ_ACCS01000039
23.1 KB
23 CDS

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whole genome shotgun sequence
NZ_ACCS01000040
22.4 KB
22 CDS

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whole genome shotgun sequence
NZ_ACCS01000041
21.1 KB
23 CDS

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whole genome shotgun sequence
NZ_ACCS01000042
16.9 KB
16 CDS

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whole genome shotgun sequence
NZ_ACCS01000043
15.9 KB
19 CDS

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whole genome shotgun sequence
NZ_ACCS01000044
14.1 KB
18 CDS

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whole genome shotgun sequence
NZ_ACCS01000045
12.9 KB
9 CDS

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whole genome shotgun sequence
NZ_ACCS01000046
12.1 KB
10 CDS

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whole genome shotgun sequence
NZ_ACCS01000047
12.0 KB
14 CDS

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whole genome shotgun sequence
NZ_ACCS01000048
11.5 KB
10 CDS

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whole genome shotgun sequence
NZ_ACCS01000049
7.5 KB
7 CDS

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whole genome shotgun sequence
NZ_ACCS01000050
6.8 KB
9 CDS

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whole genome shotgun sequence
NZ_ACCS01000051
6.3 KB
8 CDS

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whole genome shotgun sequence
NZ_ACCS01000052
6.0 KB
13 CDS

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whole genome shotgun sequence
NZ_ACCS01000053
5.5 KB
4 CDS

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whole genome shotgun sequence
NZ_ACCS01000054
4.4 KB
4 CDS

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whole genome shotgun sequence
NZ_ACCS01000055
4.1 KB
7 CDS

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whole genome shotgun sequence
NZ_ACCS01000056
3.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ACCS01000057
2.4 KB
3 CDS

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whole genome shotgun sequence
NZ_ACCS01000058
1.6 KB
5 CDS

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Taxonomy

External Links

Alicyclobacillus acidocaldarius LAA1

Search Genome

Sequences

PubMed Search for Alicyclobacillus acidocaldarius LAA1

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