Alistipes putredinis DSM 17216

Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine

GC Content: 53.3%, Released Date: Sept. 11, 2007 #17694

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABFK02000001
875 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFK02000002
774 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABFK02000003
488 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABFK02000004
451 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFK02000005
1.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ABFK02000006
1.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ABFK02000007
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABFK02000008
1023 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABFK02000009
828 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFK02000010
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ABFK02000011
635 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFK02000012
784 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFK02000013
1.4 KB
2 CDS

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whole genome shotgun sequence
NZ_ABFK02000014
2.1 KB
4 CDS

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whole genome shotgun sequence
NZ_ABFK02000015
3.8 KB
7 CDS

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whole genome shotgun sequence
NZ_ABFK02000016
612.0 KB
650 CDS

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whole genome shotgun sequence
NZ_ABFK02000017
468.4 KB
522 CDS

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whole genome shotgun sequence
NZ_ABFK02000018
222.3 KB
233 CDS

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whole genome shotgun sequence
NZ_ABFK02000019
119.1 KB
150 CDS

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whole genome shotgun sequence
NZ_ABFK02000020
1.0 MB
1156 CDS

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Taxonomy

External Links

Alistipes putredinis DSM 17216

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Sequences

PubMed Search for Alistipes putredinis DSM 17216

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