Allochromatium vinosum DSM 180

US DOE Joint Genome Institute (JGI-PGF) , DOE Joint Genome Institute , JGI-PGF

Genome Size: 3.64 megabases, GC Content: 64.2%, Released Date: June 22, 2009 #19752

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
CP001896
3.4 MB
3053 CDS

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plasmid pALVIN01
CP001897
99.8 KB
119 CDS

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plasmid pALVIN02
CP001898
39.0 KB
48 CDS

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Taxonomy

External Links

Allochromatium vinosum DSM 180

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Sequences

PubMed Search for Allochromatium vinosum DSM 180

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