alpha proteobacterium BAL199

J. Craig Venter Institute

GC Content: 65.0%, Released Date: Nov. 7, 2007 #18576

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABHC01000001
576.6 KB
625 CDS

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whole genome shotgun sequence
NZ_ABHC01000002
433.2 KB
430 CDS

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whole genome shotgun sequence
NZ_ABHC01000003
414.4 KB
410 CDS

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whole genome shotgun sequence
NZ_ABHC01000004
266.7 KB
278 CDS

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whole genome shotgun sequence
NZ_ABHC01000005
229.5 KB
216 CDS

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whole genome shotgun sequence
NZ_ABHC01000006
221.3 KB
227 CDS

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whole genome shotgun sequence
NZ_ABHC01000007
216.4 KB
214 CDS

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whole genome shotgun sequence
NZ_ABHC01000008
211.0 KB
234 CDS

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whole genome shotgun sequence
NZ_ABHC01000009
210.3 KB
217 CDS

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whole genome shotgun sequence
NZ_ABHC01000010
205.4 KB
201 CDS

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whole genome shotgun sequence
NZ_ABHC01000011
195.2 KB
208 CDS

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whole genome shotgun sequence
NZ_ABHC01000012
172.5 KB
176 CDS

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whole genome shotgun sequence
NZ_ABHC01000013
164.4 KB
124 CDS

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whole genome shotgun sequence
NZ_ABHC01000014
146.2 KB
137 CDS

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whole genome shotgun sequence
NZ_ABHC01000015
144.6 KB
138 CDS

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whole genome shotgun sequence
NZ_ABHC01000016
144.5 KB
155 CDS

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whole genome shotgun sequence
NZ_ABHC01000017
139.9 KB
159 CDS

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whole genome shotgun sequence
NZ_ABHC01000018
135.9 KB
130 CDS

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whole genome shotgun sequence
NZ_ABHC01000019
133.0 KB
158 CDS

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whole genome shotgun sequence
NZ_ABHC01000020
129.5 KB
145 CDS

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whole genome shotgun sequence
NZ_ABHC01000021
117.9 KB
117 CDS

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whole genome shotgun sequence
NZ_ABHC01000022
114.1 KB
122 CDS

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whole genome shotgun sequence
NZ_ABHC01000023
107.8 KB
106 CDS

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whole genome shotgun sequence
NZ_ABHC01000024
103.6 KB
113 CDS

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whole genome shotgun sequence
NZ_ABHC01000025
90.7 KB
88 CDS

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whole genome shotgun sequence
NZ_ABHC01000026
80.9 KB
82 CDS

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whole genome shotgun sequence
NZ_ABHC01000027
70.7 KB
85 CDS

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whole genome shotgun sequence
NZ_ABHC01000028
52.0 KB
63 CDS

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whole genome shotgun sequence
NZ_ABHC01000029
51.8 KB
58 CDS

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whole genome shotgun sequence
NZ_ABHC01000030
51.1 KB
67 CDS

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whole genome shotgun sequence
NZ_ABHC01000031
49.0 KB
59 CDS

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whole genome shotgun sequence
NZ_ABHC01000032
43.2 KB
36 CDS

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whole genome shotgun sequence
NZ_ABHC01000033
42.4 KB
40 CDS

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whole genome shotgun sequence
NZ_ABHC01000034
40.7 KB
40 CDS

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whole genome shotgun sequence
NZ_ABHC01000035
38.4 KB
44 CDS

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whole genome shotgun sequence
NZ_ABHC01000036
37.6 KB
35 CDS

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whole genome shotgun sequence
NZ_ABHC01000037
30.0 KB
36 CDS

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whole genome shotgun sequence
NZ_ABHC01000038
29.2 KB
26 CDS

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whole genome shotgun sequence
NZ_ABHC01000039
28.5 KB
33 CDS

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whole genome shotgun sequence
NZ_ABHC01000040
27.0 KB
23 CDS

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whole genome shotgun sequence
NZ_ABHC01000041
26.9 KB
21 CDS

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whole genome shotgun sequence
NZ_ABHC01000042
26.5 KB
25 CDS

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whole genome shotgun sequence
NZ_ABHC01000043
24.6 KB
27 CDS

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whole genome shotgun sequence
NZ_ABHC01000044
20.4 KB
23 CDS

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whole genome shotgun sequence
NZ_ABHC01000045
18.3 KB
18 CDS

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whole genome shotgun sequence
NZ_ABHC01000046
17.6 KB
25 CDS

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whole genome shotgun sequence
NZ_ABHC01000047
17.1 KB
21 CDS

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whole genome shotgun sequence
NZ_ABHC01000048
14.7 KB
14 CDS

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whole genome shotgun sequence
NZ_ABHC01000049
14.3 KB
10 CDS

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whole genome shotgun sequence
NZ_ABHC01000050
12.4 KB
12 CDS

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whole genome shotgun sequence
NZ_ABHC01000051
11.6 KB
12 CDS

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whole genome shotgun sequence
NZ_ABHC01000052
11.6 KB
16 CDS

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whole genome shotgun sequence
NZ_ABHC01000053
7.4 KB
6 CDS

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whole genome shotgun sequence
NZ_ABHC01000054
6.7 KB
5 CDS

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whole genome shotgun sequence
NZ_ABHC01000055
4.8 KB
5 CDS

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whole genome shotgun sequence
NZ_ABHC01000056
4.0 KB
3 CDS

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whole genome shotgun sequence
NZ_ABHC01000057
2.8 KB
3 CDS

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whole genome shotgun sequence
NZ_ABHC01000058
2.5 KB
5 CDS

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whole genome shotgun sequence
NZ_ABHC01000059
2.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ABHC01000060
2.0 KB
3 CDS

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whole genome shotgun sequence
NZ_ABHC01000061
1.9 KB
4 CDS

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whole genome shotgun sequence
NZ_ABHC01000062
1.8 KB
2 CDS

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whole genome shotgun sequence
NZ_ABHC01000063
1.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ABHC01000064
1.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ABHC01000065
1.6 KB
0 CDS

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whole genome shotgun sequence
NZ_ABHC01000066
1.6 KB
1 CDS

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whole genome shotgun sequence
NZ_ABHC01000067
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ABHC01000068
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ABHC01000069
1.2 KB
2 CDS

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Taxonomy

External Links

alpha proteobacterium BAL199

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Sequences

PubMed Search for alpha proteobacterium BAL199

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