Anaerococcus vaginalis ATCC 51170

Baylor College of Medicine

Released Date: Aug. 21, 2009 #17702

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACXU01000001
3.0 KB
0 CDS

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whole genome shotgun sequence
NZ_ACXU01000002
48.9 KB
42 CDS

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whole genome shotgun sequence
NZ_ACXU01000003
6.7 KB
7 CDS

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whole genome shotgun sequence
NZ_ACXU01000004
138.8 KB
147 CDS

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whole genome shotgun sequence
NZ_ACXU01000005
320.5 KB
287 CDS

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whole genome shotgun sequence
NZ_ACXU01000006
97.8 KB
101 CDS

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whole genome shotgun sequence
NZ_ACXU01000007
9.3 KB
9 CDS

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whole genome shotgun sequence
NZ_ACXU01000008
10.2 KB
9 CDS

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whole genome shotgun sequence
NZ_ACXU01000009
50.4 KB
60 CDS

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whole genome shotgun sequence
NZ_ACXU01000010
22.9 KB
31 CDS

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whole genome shotgun sequence
NZ_ACXU01000011
128.2 KB
129 CDS

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whole genome shotgun sequence
NZ_ACXU01000012
84.0 KB
83 CDS

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whole genome shotgun sequence
NZ_ACXU01000013
59.9 KB
61 CDS

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whole genome shotgun sequence
NZ_ACXU01000014
61.6 KB
57 CDS

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whole genome shotgun sequence
NZ_ACXU01000015
109.9 KB
106 CDS

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whole genome shotgun sequence
NZ_ACXU01000016
1.4 KB
0 CDS

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whole genome shotgun sequence
NZ_ACXU01000017
82.5 KB
75 CDS

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whole genome shotgun sequence
NZ_ACXU01000018
9.7 KB
9 CDS

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whole genome shotgun sequence
NZ_ACXU01000019
35.1 KB
37 CDS

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whole genome shotgun sequence
NZ_ACXU01000020
76.8 KB
62 CDS

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whole genome shotgun sequence
NZ_ACXU01000021
235.1 KB
216 CDS

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whole genome shotgun sequence
NZ_ACXU01000022
60.4 KB
56 CDS

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whole genome shotgun sequence
NZ_ACXU01000023
71.2 KB
70 CDS

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whole genome shotgun sequence
NZ_ACXU01000024
102.7 KB
105 CDS

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whole genome shotgun sequence
NZ_ACXU01000025
1.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ACXU01000026
717 bytes
2 CDS

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whole genome shotgun sequence
NZ_ACXU01000027
1.1 KB
0 CDS

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whole genome shotgun sequence
NZ_ACXU01000028
1.2 KB
1 CDS

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Taxonomy

External Links

Anaerococcus vaginalis ATCC 51170

Search Genome

Sequences

PubMed Search for Anaerococcus vaginalis ATCC 51170

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