Anaplasma marginale str. Puerto Rico

Washington State University

GC Content: 49.8%, Released Date: Jan. 30, 2009 #17707

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABOQ01000001
23.2 KB
19 CDS

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whole genome shotgun sequence
NZ_ABOQ01000002
8.7 KB
9 CDS

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whole genome shotgun sequence
NZ_ABOQ01000003
7.8 KB
10 CDS

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whole genome shotgun sequence
NZ_ABOQ01000004
614 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABOQ01000005
16.3 KB
9 CDS

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whole genome shotgun sequence
NZ_ABOQ01000006
5.2 KB
6 CDS

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whole genome shotgun sequence
NZ_ABOQ01000007
5.7 KB
9 CDS

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whole genome shotgun sequence
NZ_ABOQ01000008
17.8 KB
14 CDS

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whole genome shotgun sequence
NZ_ABOQ01000009
1.8 KB
2 CDS

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whole genome shotgun sequence
NZ_ABOQ01000010
10.9 KB
9 CDS

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whole genome shotgun sequence
NZ_ABOQ01000011
573 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABOQ01000012
15.6 KB
12 CDS

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whole genome shotgun sequence
NZ_ABOQ01000013
23.7 KB
20 CDS

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whole genome shotgun sequence
NZ_ABOQ01000014
3.7 KB
4 CDS

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whole genome shotgun sequence
NZ_ABOQ01000015
15.2 KB
13 CDS

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whole genome shotgun sequence
NZ_ABOQ01000016
34.6 KB
30 CDS

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whole genome shotgun sequence
NZ_ABOQ01000017
78.6 KB
70 CDS

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whole genome shotgun sequence
NZ_ABOQ01000018
4.4 KB
3 CDS

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whole genome shotgun sequence
NZ_ABOQ01000019
27.7 KB
11 CDS

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whole genome shotgun sequence
NZ_ABOQ01000020
38.0 KB
25 CDS

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whole genome shotgun sequence
NZ_ABOQ01000021
115.3 KB
87 CDS

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whole genome shotgun sequence
NZ_ABOQ01000022
35.3 KB
23 CDS

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whole genome shotgun sequence
NZ_ABOQ01000023
3.6 KB
6 CDS

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whole genome shotgun sequence
NZ_ABOQ01000024
2.2 KB
5 CDS

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whole genome shotgun sequence
NZ_ABOQ01000025
17.8 KB
22 CDS

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whole genome shotgun sequence
NZ_ABOQ01000026
51.4 KB
37 CDS

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whole genome shotgun sequence
NZ_ABOQ01000027
12.2 KB
10 CDS

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whole genome shotgun sequence
NZ_ABOQ01000028
3.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ABOQ01000029
26.0 KB
14 CDS

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whole genome shotgun sequence
NZ_ABOQ01000030
14.2 KB
7 CDS

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whole genome shotgun sequence
NZ_ABOQ01000031
2.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ABOQ01000032
7.3 KB
9 CDS

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whole genome shotgun sequence
NZ_ABOQ01000033
33.9 KB
30 CDS

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whole genome shotgun sequence
NZ_ABOQ01000034
6.2 KB
5 CDS

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whole genome shotgun sequence
NZ_ABOQ01000035
21.3 KB
21 CDS

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whole genome shotgun sequence
NZ_ABOQ01000036
54.6 KB
33 CDS

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whole genome shotgun sequence
NZ_ABOQ01000037
16.2 KB
17 CDS

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whole genome shotgun sequence
NZ_ABOQ01000038
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ABOQ01000039
582 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABOQ01000040
20.0 KB
33 CDS

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whole genome shotgun sequence
NZ_ABOQ01000041
23.4 KB
19 CDS

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whole genome shotgun sequence
NZ_ABOQ01000042
20.6 KB
19 CDS

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whole genome shotgun sequence
NZ_ABOQ01000043
3.8 KB
4 CDS

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whole genome shotgun sequence
NZ_ABOQ01000044
15.8 KB
15 CDS

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whole genome shotgun sequence
NZ_ABOQ01000045
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABOQ01000046
20.9 KB
19 CDS

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whole genome shotgun sequence
NZ_ABOQ01000047
16.0 KB
16 CDS

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whole genome shotgun sequence
NZ_ABOQ01000048
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABOQ01000049
19.3 KB
9 CDS

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whole genome shotgun sequence
NZ_ABOQ01000050
63.9 KB
60 CDS

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whole genome shotgun sequence
NZ_ABOQ01000051
2.6 KB
5 CDS

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whole genome shotgun sequence
NZ_ABOQ01000052
522 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABOQ01000053
2.0 KB
3 CDS

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whole genome shotgun sequence
NZ_ABOQ01000054
11.2 KB
10 CDS

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whole genome shotgun sequence
NZ_ABOQ01000055
38.3 KB
34 CDS

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whole genome shotgun sequence
NZ_ABOQ01000056
1008 bytes
3 CDS

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whole genome shotgun sequence
NZ_ABOQ01000057
22.2 KB
20 CDS

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whole genome shotgun sequence
NZ_ABOQ01000058
64.7 KB
66 CDS

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whole genome shotgun sequence
NZ_ABOQ01000059
17.3 KB
14 CDS

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References

Conservation in the face of diversity: multistrain analysis of an intracellular bacterium
Dark,M.J., Herndon,D.R., Kappmeyer,L.S., Gonzales,M.P., Nordeen,E., Palmer,G.H., Knowles,D.P. Jr. and Brayton,K.A. BMC Genomics 10, 16 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Anaplasma marginale str. Puerto Rico

Search Genome

Sequences

References

Related Genomes