Anaplasma marginale str. Virginia

Washington State University

GC Content: 49.8%, Released Date: Jan. 30, 2009 #17708

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABOR01000001
23.2 KB
24 CDS

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whole genome shotgun sequence
NZ_ABOR01000002
8.7 KB
8 CDS

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whole genome shotgun sequence
NZ_ABOR01000003
579 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABOR01000004
7.8 KB
9 CDS

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whole genome shotgun sequence
NZ_ABOR01000005
989 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABOR01000006
567 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABOR01000007
6.3 KB
4 CDS

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whole genome shotgun sequence
NZ_ABOR01000008
1.1 KB
0 CDS

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whole genome shotgun sequence
NZ_ABOR01000009
8.3 KB
6 CDS

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whole genome shotgun sequence
NZ_ABOR01000010
4.7 KB
5 CDS

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whole genome shotgun sequence
NZ_ABOR01000011
3.7 KB
7 CDS

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whole genome shotgun sequence
NZ_ABOR01000012
19.1 KB
16 CDS

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whole genome shotgun sequence
NZ_ABOR01000013
2.4 KB
2 CDS

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whole genome shotgun sequence
NZ_ABOR01000014
10.6 KB
8 CDS

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whole genome shotgun sequence
NZ_ABOR01000015
39.8 KB
32 CDS

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whole genome shotgun sequence
NZ_ABOR01000016
19.4 KB
18 CDS

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whole genome shotgun sequence
NZ_ABOR01000017
34.6 KB
28 CDS

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whole genome shotgun sequence
NZ_ABOR01000018
24.3 KB
21 CDS

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whole genome shotgun sequence
NZ_ABOR01000019
58.8 KB
47 CDS

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whole genome shotgun sequence
NZ_ABOR01000020
15.4 KB
7 CDS

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whole genome shotgun sequence
NZ_ABOR01000021
27.7 KB
18 CDS

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whole genome shotgun sequence
NZ_ABOR01000022
63.8 KB
42 CDS

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whole genome shotgun sequence
NZ_ABOR01000023
74.1 KB
57 CDS

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whole genome shotgun sequence
NZ_ABOR01000024
35.3 KB
22 CDS

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whole genome shotgun sequence
NZ_ABOR01000025
3.6 KB
6 CDS

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whole genome shotgun sequence
NZ_ABOR01000026
2.2 KB
5 CDS

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whole genome shotgun sequence
NZ_ABOR01000027
17.8 KB
22 CDS

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whole genome shotgun sequence
NZ_ABOR01000028
51.4 KB
41 CDS

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whole genome shotgun sequence
NZ_ABOR01000029
10.4 KB
11 CDS

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whole genome shotgun sequence
NZ_ABOR01000030
948 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABOR01000031
3.6 KB
1 CDS

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whole genome shotgun sequence
NZ_ABOR01000032
26.0 KB
12 CDS

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whole genome shotgun sequence
NZ_ABOR01000033
16.8 KB
10 CDS

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whole genome shotgun sequence
NZ_ABOR01000034
7.5 KB
8 CDS

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whole genome shotgun sequence
NZ_ABOR01000035
33.9 KB
29 CDS

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whole genome shotgun sequence
NZ_ABOR01000036
6.2 KB
5 CDS

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whole genome shotgun sequence
NZ_ABOR01000037
21.3 KB
21 CDS

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whole genome shotgun sequence
NZ_ABOR01000038
9.7 KB
2 CDS

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whole genome shotgun sequence
NZ_ABOR01000039
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABOR01000040
42.7 KB
29 CDS

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whole genome shotgun sequence
NZ_ABOR01000041
16.2 KB
15 CDS

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whole genome shotgun sequence
NZ_ABOR01000042
1.9 KB
4 CDS

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whole genome shotgun sequence
NZ_ABOR01000043
20.2 KB
33 CDS

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whole genome shotgun sequence
NZ_ABOR01000044
44.3 KB
35 CDS

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whole genome shotgun sequence
NZ_ABOR01000045
3.8 KB
4 CDS

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whole genome shotgun sequence
NZ_ABOR01000046
15.8 KB
14 CDS

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whole genome shotgun sequence
NZ_ABOR01000047
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABOR01000048
21.0 KB
19 CDS

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whole genome shotgun sequence
NZ_ABOR01000049
16.4 KB
17 CDS

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whole genome shotgun sequence
NZ_ABOR01000050
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABOR01000051
1.4 KB
0 CDS

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whole genome shotgun sequence
NZ_ABOR01000052
3.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ABOR01000053
916 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABOR01000054
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ABOR01000055
898 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABOR01000056
9.4 KB
10 CDS

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whole genome shotgun sequence
NZ_ABOR01000057
64.0 KB
57 CDS

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whole genome shotgun sequence
NZ_ABOR01000058
2.6 KB
5 CDS

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whole genome shotgun sequence
NZ_ABOR01000059
542 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABOR01000060
1.4 KB
3 CDS

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whole genome shotgun sequence
NZ_ABOR01000061
4.5 KB
8 CDS

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whole genome shotgun sequence
NZ_ABOR01000062
6.5 KB
4 CDS

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whole genome shotgun sequence
NZ_ABOR01000063
38.2 KB
36 CDS

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whole genome shotgun sequence
NZ_ABOR01000064
954 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABOR01000065
2.4 KB
4 CDS

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whole genome shotgun sequence
NZ_ABOR01000066
19.6 KB
22 CDS

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whole genome shotgun sequence
NZ_ABOR01000067
14.2 KB
14 CDS

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whole genome shotgun sequence
NZ_ABOR01000068
50.4 KB
45 CDS

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whole genome shotgun sequence
NZ_ABOR01000069
679 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABOR01000070
15.0 KB
12 CDS

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References

Conservation in the face of diversity: multistrain analysis of an intracellular bacterium
Dark,M.J., Herndon,D.R., Kappmeyer,L.S., Gonzales,M.P., Nordeen,E., Palmer,G.H., Knowles,D.P. Jr. and Brayton,K.A. BMC Genomics 10, 16 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Anaplasma marginale str. Virginia

Search Genome

Sequences

References

Related Genomes