Aquifex aeolicus VF5

DIVERSA

Genome Size: 1.59 megabases, GC Content: 43.3%, Released Date: April 16, 1998 #16681

Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_000918
1.5 MB
1529 CDS

Table view
Circular View
Artemis Viewer

plasmid ece1
NC_001880
38.5 KB
31 CDS

Table view
Circular View
Artemis Viewer

References

The complete genome of the hyperthermophilic bacterium Aquifex aeolicus
Deckert,G., Warren,P.V., Gaasterland,T., Young,W.G., Lenox,A.L., Graham,D.E., Overbeek,R., Snead,M.A., Keller,M., Aujay,M., Huber,R., Feldman,R.A., Short,J.M., Olsen,G.J. and Swanson,R.V. Nature 392 (6674), 353-358 (1998)
PubMed, PubGet, HubMed

Taxonomy

External Links

Aquifex aeolicus VF5

Search Genome

Sequences

References

Related Genomes