Arcobacter butzleri JV22

Baylor College of Medicine

Released Date: Dec. 27, 2010 #20149

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

contig00001, whole genome shotgun sequence
NZ_AEPT01000001
571 bytes
1 CDS

Table view
Circular View
Artemis Viewer

contig00002, whole genome shotgun sequence
NZ_AEPT01000002
1.2 KB
2 CDS

Table view
Circular View
Artemis Viewer

contig00004, whole genome shotgun sequence
NZ_AEPT01000003
1.2 KB
1 CDS

Table view
Circular View
Artemis Viewer

contig00005, whole genome shotgun sequence
NZ_AEPT01000004
24.2 KB
24 CDS

Table view
Circular View
Artemis Viewer

contig00006, whole genome shotgun sequence
NZ_AEPT01000005
19.8 KB
23 CDS

Table view
Circular View
Artemis Viewer

contig00007, whole genome shotgun sequence
NZ_AEPT01000006
188.1 KB
202 CDS

Table view
Circular View
Artemis Viewer

contig00008, whole genome shotgun sequence
NZ_AEPT01000007
19.0 KB
22 CDS

Table view
Circular View
Artemis Viewer

contig00009, whole genome shotgun sequence
NZ_AEPT01000008
22.6 KB
19 CDS

Table view
Circular View
Artemis Viewer

contig00010, whole genome shotgun sequence
NZ_AEPT01000009
165.1 KB
171 CDS

Table view
Circular View
Artemis Viewer

contig00011, whole genome shotgun sequence
NZ_AEPT01000010
137.5 KB
145 CDS

Table view
Circular View
Artemis Viewer

contig00012, whole genome shotgun sequence
NZ_AEPT01000011
46.3 KB
48 CDS

Table view
Circular View
Artemis Viewer

contig00013, whole genome shotgun sequence
NZ_AEPT01000012
15.9 KB
13 CDS

Table view
Circular View
Artemis Viewer

contig00014, whole genome shotgun sequence
NZ_AEPT01000013
42.5 KB
50 CDS

Table view
Circular View
Artemis Viewer

contig00015, whole genome shotgun sequence
NZ_AEPT01000014
5.2 KB
5 CDS

Table view
Circular View
Artemis Viewer

contig00016, whole genome shotgun sequence
NZ_AEPT01000015
19.5 KB
23 CDS

Table view
Circular View
Artemis Viewer

contig00017, whole genome shotgun sequence
NZ_AEPT01000016
25.7 KB
24 CDS

Table view
Circular View
Artemis Viewer

contig00018, whole genome shotgun sequence
NZ_AEPT01000017
7.7 KB
8 CDS

Table view
Circular View
Artemis Viewer

contig00019, whole genome shotgun sequence
NZ_AEPT01000018
93.5 KB
115 CDS

Table view
Circular View
Artemis Viewer

contig00020, whole genome shotgun sequence
NZ_AEPT01000019
3.4 KB
2 CDS

Table view
Circular View
Artemis Viewer

contig00021, whole genome shotgun sequence
NZ_AEPT01000020
24.4 KB
29 CDS

Table view
Circular View
Artemis Viewer

contig00022, whole genome shotgun sequence
NZ_AEPT01000021
1.8 KB
3 CDS

Table view
Circular View
Artemis Viewer

contig00023, whole genome shotgun sequence
NZ_AEPT01000022
77.3 KB
81 CDS

Table view
Circular View
Artemis Viewer

contig00024, whole genome shotgun sequence
NZ_AEPT01000023
22.3 KB
27 CDS

Table view
Circular View
Artemis Viewer

contig00025, whole genome shotgun sequence
NZ_AEPT01000024
3.8 KB
5 CDS

Table view
Circular View
Artemis Viewer

contig00026, whole genome shotgun sequence
NZ_AEPT01000025
3.1 KB
3 CDS

Table view
Circular View
Artemis Viewer

contig00027, whole genome shotgun sequence
NZ_AEPT01000026
18.0 KB
17 CDS

Table view
Circular View
Artemis Viewer

contig00028, whole genome shotgun sequence
NZ_AEPT01000027
2.3 KB
2 CDS

Table view
Circular View
Artemis Viewer

contig00029, whole genome shotgun sequence
NZ_AEPT01000028
19.2 KB
22 CDS

Table view
Circular View
Artemis Viewer

contig00030, whole genome shotgun sequence
NZ_AEPT01000029
13.8 KB
14 CDS

Table view
Circular View
Artemis Viewer

contig00031, whole genome shotgun sequence
NZ_AEPT01000030
33.7 KB
31 CDS

Table view
Circular View
Artemis Viewer

contig00032, whole genome shotgun sequence
NZ_AEPT01000031
2.0 KB
2 CDS

Table view
Circular View
Artemis Viewer

contig00033, whole genome shotgun sequence
NZ_AEPT01000032
1.4 KB
1 CDS

Table view
Circular View
Artemis Viewer

contig00035, whole genome shotgun sequence
NZ_AEPT01000033
771 bytes
1 CDS

Table view
Circular View
Artemis Viewer

contig00036, whole genome shotgun sequence
NZ_AEPT01000034
1.8 KB
1 CDS

Table view
Circular View
Artemis Viewer

contig00039, whole genome shotgun sequence
NZ_AEPT01000035
714 bytes
1 CDS

Table view
Circular View
Artemis Viewer

contig00049, whole genome shotgun sequence
NZ_AEPT01000036
72.4 KB
77 CDS

Table view
Circular View
Artemis Viewer

contig00050, whole genome shotgun sequence
NZ_AEPT01000037
2.6 KB
5 CDS

Table view
Circular View
Artemis Viewer

contig00051, whole genome shotgun sequence
NZ_AEPT01000038
43.0 KB
49 CDS

Table view
Circular View
Artemis Viewer

contig00052, whole genome shotgun sequence
NZ_AEPT01000039
31.4 KB
32 CDS

Table view
Circular View
Artemis Viewer

contig00053, whole genome shotgun sequence
NZ_AEPT01000040
11.0 KB
10 CDS

Table view
Circular View
Artemis Viewer

contig00054, whole genome shotgun sequence
NZ_AEPT01000041
313 bytes
1 CDS

Table view
Circular View
Artemis Viewer

contig00055, whole genome shotgun sequence
NZ_AEPT01000042
46.6 KB
51 CDS

Table view
Circular View
Artemis Viewer

contig00056, whole genome shotgun sequence
NZ_AEPT01000043
44.6 KB
45 CDS

Table view
Circular View
Artemis Viewer

contig00057, whole genome shotgun sequence
NZ_AEPT01000044
1.2 KB
1 CDS

Table view
Circular View
Artemis Viewer

contig00058, whole genome shotgun sequence
NZ_AEPT01000045
6.3 KB
9 CDS

Table view
Circular View
Artemis Viewer

contig00059, whole genome shotgun sequence
NZ_AEPT01000046
12.3 KB
20 CDS

Table view
Circular View
Artemis Viewer

contig00060, whole genome shotgun sequence
NZ_AEPT01000047
46.4 KB
50 CDS

Table view
Circular View
Artemis Viewer

contig00061, whole genome shotgun sequence
NZ_AEPT01000048
141.7 KB
172 CDS

Table view
Circular View
Artemis Viewer

contig00062, whole genome shotgun sequence
NZ_AEPT01000049
122.2 KB
120 CDS

Table view
Circular View
Artemis Viewer

contig00063, whole genome shotgun sequence
NZ_AEPT01000050
45.9 KB
47 CDS

Table view
Circular View
Artemis Viewer

contig00064, whole genome shotgun sequence
NZ_AEPT01000051
9.4 KB
12 CDS

Table view
Circular View
Artemis Viewer

contig00065, whole genome shotgun sequence
NZ_AEPT01000052
14.1 KB
20 CDS

Table view
Circular View
Artemis Viewer

contig00066, whole genome shotgun sequence
NZ_AEPT01000053
64.2 KB
86 CDS

Table view
Circular View
Artemis Viewer

contig00067, whole genome shotgun sequence
NZ_AEPT01000054
35.7 KB
33 CDS

Table view
Circular View
Artemis Viewer

contig00068, whole genome shotgun sequence
NZ_AEPT01000055
1.9 KB
1 CDS

Table view
Circular View
Artemis Viewer

contig00069, whole genome shotgun sequence
NZ_AEPT01000056
3.7 KB
5 CDS

Table view
Circular View
Artemis Viewer

contig00070, whole genome shotgun sequence
NZ_AEPT01000057
14.8 KB
18 CDS

Table view
Circular View
Artemis Viewer

contig00071, whole genome shotgun sequence
NZ_AEPT01000058
5.5 KB
7 CDS

Table view
Circular View
Artemis Viewer

contig00072, whole genome shotgun sequence
NZ_AEPT01000059
41.1 KB
46 CDS

Table view
Circular View
Artemis Viewer

contig00073, whole genome shotgun sequence
NZ_AEPT01000060
6.3 KB
7 CDS

Table view
Circular View
Artemis Viewer

contig00074, whole genome shotgun sequence
NZ_AEPT01000061
43.4 KB
38 CDS

Table view
Circular View
Artemis Viewer

contig00075, whole genome shotgun sequence
NZ_AEPT01000062
32.3 KB
32 CDS

Table view
Circular View
Artemis Viewer

contig00076, whole genome shotgun sequence
NZ_AEPT01000063
3.3 KB
5 CDS

Table view
Circular View
Artemis Viewer

contig00077, whole genome shotgun sequence
NZ_AEPT01000064
11.8 KB
13 CDS

Table view
Circular View
Artemis Viewer

contig00078, whole genome shotgun sequence
NZ_AEPT01000065
56.7 KB
53 CDS

Table view
Circular View
Artemis Viewer

contig00079, whole genome shotgun sequence
NZ_AEPT01000066
71.2 KB
82 CDS

Table view
Circular View
Artemis Viewer

contig00080, whole genome shotgun sequence
NZ_AEPT01000067
22.2 KB
23 CDS

Table view
Circular View
Artemis Viewer

contig00081, whole genome shotgun sequence
NZ_AEPT01000068
7.0 KB
9 CDS

Table view
Circular View
Artemis Viewer

contig00082, whole genome shotgun sequence
NZ_AEPT01000069
24.2 KB
23 CDS

Table view
Circular View
Artemis Viewer

contig00083, whole genome shotgun sequence
NZ_AEPT01000070
25.9 KB
33 CDS

Table view
Circular View
Artemis Viewer

contig00084, whole genome shotgun sequence
NZ_AEPT01000071
5.5 KB
0 CDS

Table view
Circular View
Artemis Viewer

contig00087, whole genome shotgun sequence
NZ_AEPT01000072
1.1 KB
1 CDS

Table view
Circular View
Artemis Viewer

contig00088, whole genome shotgun sequence
NZ_AEPT01000073
576 bytes
1 CDS

Table view
Circular View
Artemis Viewer

contig00089, whole genome shotgun sequence
NZ_AEPT01000074
2.2 KB
1 CDS

Table view
Circular View
Artemis Viewer

contig00090, whole genome shotgun sequence
NZ_AEPT01000075
1.5 KB
2 CDS

Table view
Circular View
Artemis Viewer

contig00092, whole genome shotgun sequence
NZ_AEPT01000076
955 bytes
1 CDS

Table view
Circular View
Artemis Viewer

contig00095, whole genome shotgun sequence
NZ_AEPT01000077
521 bytes
1 CDS

Table view
Circular View
Artemis Viewer

contig00096, whole genome shotgun sequence
NZ_AEPT01000078
524 bytes
1 CDS

Table view
Circular View
Artemis Viewer

Taxonomy

External Links

Arcobacter butzleri JV22

Search Genome

Sequences

PubMed Search for Arcobacter butzleri JV22

Related Genomes