Arthrospira platensis NIES-39

National Institute of Technology and Evaluation

Genome Size: 6.8 megabases, Released Date: March 25, 2010 #19759

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

*** SEQUENCING IN PROGRESS ***, 19 ordered pieces
AP011615
6.5 MB
6630 CDS

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References

Genomic structure of an economically important cyanobacterium, Arthrospira (Spirulina) platensis NIES-39
Fujisawa,T., Narikawa,R., Okamoto,S., Ehira,S., Yoshimura,H., Suzuki,I., Masuda,T., Mochimaru,M., Takaichi,S., Awai,K., Sekine,M., Horikawa,H., Yashiro,I., Omata,S., Takarada,H., Katano,Y., Kosugi,H., Tanikawa,S., Ohmori,K., Sato,N., Ikeuchi,M., Fujita,N. and Ohmori,M. DNA Res. 17 (2), 85-103 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Arthrospira platensis NIES-39

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Sequences

References

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