Atopobium rimae ATCC 49626

J. Craig Venter Institute

Genome Size: 2.0 megabases, GC Content: 49.3%, Released Date: Jan. 22, 2009 #17712

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACFE01000001
552.4 KB
534 CDS

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whole genome shotgun sequence
NZ_ACFE01000002
452.9 KB
465 CDS

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whole genome shotgun sequence
NZ_ACFE01000003
240.4 KB
249 CDS

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whole genome shotgun sequence
NZ_ACFE01000004
189.6 KB
170 CDS

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whole genome shotgun sequence
NZ_ACFE01000005
137.9 KB
120 CDS

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whole genome shotgun sequence
NZ_ACFE01000006
6.3 KB
5 CDS

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whole genome shotgun sequence
NZ_ACFE01000007
5.1 KB
0 CDS

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whole genome shotgun sequence
NZ_ACFE01000008
3.0 KB
4 CDS

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whole genome shotgun sequence
NZ_ACFE01000009
602 bytes
1 CDS

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Taxonomy

External Links

Atopobium rimae ATCC 49626

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Sequences

PubMed Search for Atopobium rimae ATCC 49626

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