Atopobium vaginae DSM 15829

Baylor College of Medecine

GC Content: 42.7%, Released Date: Feb. 18, 2009 #17713

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACGK01000001
201.5 KB
191 CDS

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whole genome shotgun sequence
NZ_ACGK01000002
205 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000003
5.1 KB
0 CDS

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whole genome shotgun sequence
NZ_ACGK01000004
30.7 KB
18 CDS

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whole genome shotgun sequence
NZ_ACGK01000005
3.6 KB
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000006
75.7 KB
65 CDS

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whole genome shotgun sequence
NZ_ACGK01000007
152.5 KB
139 CDS

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whole genome shotgun sequence
NZ_ACGK01000008
132.0 KB
109 CDS

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whole genome shotgun sequence
NZ_ACGK01000009
202 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACGK01000010
241 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACGK01000011
17.5 KB
17 CDS

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whole genome shotgun sequence
NZ_ACGK01000012
201 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000013
241 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000014
241 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000015
241 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACGK01000016
241 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACGK01000017
235 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000018
241 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000019
241 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000020
217 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000021
212 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000022
241 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000023
210 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000024
236 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000025
234 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000026
241 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACGK01000027
241 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000028
241 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACGK01000029
241 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACGK01000030
229 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000031
231 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACGK01000032
235 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000033
241 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACGK01000034
241 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000035
241 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000036
241 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000037
241 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000038
225 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000039
239 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000040
241 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000041
227 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000042
236 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACGK01000043
241 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000044
438 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000045
61.9 KB
53 CDS

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whole genome shotgun sequence
NZ_ACGK01000046
83.5 KB
79 CDS

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whole genome shotgun sequence
NZ_ACGK01000047
52.9 KB
48 CDS

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whole genome shotgun sequence
NZ_ACGK01000048
9.6 KB
10 CDS

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whole genome shotgun sequence
NZ_ACGK01000049
101.1 KB
105 CDS

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whole genome shotgun sequence
NZ_ACGK01000050
76.5 KB
64 CDS

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whole genome shotgun sequence
NZ_ACGK01000051
15.9 KB
12 CDS

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whole genome shotgun sequence
NZ_ACGK01000052
943 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000053
366.4 KB
327 CDS

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whole genome shotgun sequence
NZ_ACGK01000054
252 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000055
375 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACGK01000056
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000057
227 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000058
425 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000059
892 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000060
319 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACGK01000061
216 bytes
0 CDS

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Taxonomy

External Links

Atopobium vaginae DSM 15829

Search Genome

Sequences

PubMed Search for Atopobium vaginae DSM 15829

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