Atopobium vaginae PB189-T1-4

J. Craig Venter Institute

Genome Size: 1.4 megabases, Released Date: Aug. 10, 2010 #20151

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

contig00052, whole genome shotgun sequence
NZ_AEDQ01000001
7.5 KB
5 CDS

Table view
Circular View
Artemis Viewer

contig00050, whole genome shotgun sequence
NZ_AEDQ01000002
1.2 KB
1 CDS

Table view
Circular View
Artemis Viewer

contig00029, whole genome shotgun sequence
NZ_AEDQ01000003
61.4 KB
57 CDS

Table view
Circular View
Artemis Viewer

contig00009, whole genome shotgun sequence
NZ_AEDQ01000004
29.0 KB
28 CDS

Table view
Circular View
Artemis Viewer

contig00034, whole genome shotgun sequence
NZ_AEDQ01000005
2.0 KB
1 CDS

Table view
Circular View
Artemis Viewer

contig00024, whole genome shotgun sequence
NZ_AEDQ01000006
3.5 KB
3 CDS

Table view
Circular View
Artemis Viewer

contig00002, whole genome shotgun sequence
NZ_AEDQ01000007
29.3 KB
24 CDS

Table view
Circular View
Artemis Viewer

contig00001, whole genome shotgun sequence
NZ_AEDQ01000008
19.0 KB
14 CDS

Table view
Circular View
Artemis Viewer

contig00026, whole genome shotgun sequence
NZ_AEDQ01000009
15.2 KB
17 CDS

Table view
Circular View
Artemis Viewer

contig00048, whole genome shotgun sequence
NZ_AEDQ01000010
84.8 KB
81 CDS

Table view
Circular View
Artemis Viewer

contig00022, whole genome shotgun sequence
NZ_AEDQ01000011
9.0 KB
8 CDS

Table view
Circular View
Artemis Viewer

contig00038, whole genome shotgun sequence
NZ_AEDQ01000012
3.2 KB
3 CDS

Table view
Circular View
Artemis Viewer

contig00033, whole genome shotgun sequence
NZ_AEDQ01000013
16.0 KB
10 CDS

Table view
Circular View
Artemis Viewer

contig00039, whole genome shotgun sequence
NZ_AEDQ01000014
37.7 KB
29 CDS

Table view
Circular View
Artemis Viewer

contig00028, whole genome shotgun sequence
NZ_AEDQ01000015
10.2 KB
9 CDS

Table view
Circular View
Artemis Viewer

contig00019, whole genome shotgun sequence
NZ_AEDQ01000016
84.0 KB
86 CDS

Table view
Circular View
Artemis Viewer

contig00032, whole genome shotgun sequence
NZ_AEDQ01000017
255.5 KB
213 CDS

Table view
Circular View
Artemis Viewer

contig00014, whole genome shotgun sequence
NZ_AEDQ01000018
93.7 KB
81 CDS

Table view
Circular View
Artemis Viewer

contig00049, whole genome shotgun sequence
NZ_AEDQ01000019
17.8 KB
15 CDS

Table view
Circular View
Artemis Viewer

contig00016, whole genome shotgun sequence
NZ_AEDQ01000020
12.0 KB
17 CDS

Table view
Circular View
Artemis Viewer

contig00030, whole genome shotgun sequence
NZ_AEDQ01000021
65.1 KB
41 CDS

Table view
Circular View
Artemis Viewer

contig00018, whole genome shotgun sequence
NZ_AEDQ01000022
44.2 KB
28 CDS

Table view
Circular View
Artemis Viewer

contig00031, whole genome shotgun sequence
NZ_AEDQ01000023
34.9 KB
26 CDS

Table view
Circular View
Artemis Viewer

contig00045, whole genome shotgun sequence
NZ_AEDQ01000024
5.0 KB
0 CDS

Table view
Circular View
Artemis Viewer

contig00007, whole genome shotgun sequence
NZ_AEDQ01000025
713 bytes
0 CDS

Table view
Circular View
Artemis Viewer

contig00003, whole genome shotgun sequence
NZ_AEDQ01000026
7.8 KB
8 CDS

Table view
Circular View
Artemis Viewer

contig00013, whole genome shotgun sequence
NZ_AEDQ01000027
51.9 KB
46 CDS

Table view
Circular View
Artemis Viewer

contig00017, whole genome shotgun sequence
NZ_AEDQ01000028
1.5 KB
1 CDS

Table view
Circular View
Artemis Viewer

contig00020, whole genome shotgun sequence
NZ_AEDQ01000029
148.1 KB
138 CDS

Table view
Circular View
Artemis Viewer

contig00010, whole genome shotgun sequence
NZ_AEDQ01000030
54.4 KB
55 CDS

Table view
Circular View
Artemis Viewer

contig00005, whole genome shotgun sequence
NZ_AEDQ01000031
42.3 KB
33 CDS

Table view
Circular View
Artemis Viewer

contig00054, whole genome shotgun sequence
NZ_AEDQ01000032
22.5 KB
20 CDS

Table view
Circular View
Artemis Viewer

contig00027, whole genome shotgun sequence
NZ_AEDQ01000033
114.8 KB
94 CDS

Table view
Circular View
Artemis Viewer

contig00006, whole genome shotgun sequence
NZ_AEDQ01000034
30.4 KB
25 CDS

Table view
Circular View
Artemis Viewer

Taxonomy

External Links

Atopobium vaginae PB189-T1-4

Search Genome

Sequences

PubMed Search for Atopobium vaginae PB189-T1-4

Related Genomes