Aurantimonas manganoxydans SI85-9A1

J. Craig Venter Institute

Genome Size: 5.0 megabases, GC Content: 66.7%, Released Date: March 23, 2006 #17714

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAPJ01000001
1.1 MB
974 CDS

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whole genome shotgun sequence
NZ_AAPJ01000002
649.9 KB
563 CDS

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whole genome shotgun sequence
NZ_AAPJ01000003
615.1 KB
543 CDS

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whole genome shotgun sequence
NZ_AAPJ01000004
424.8 KB
345 CDS

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whole genome shotgun sequence
NZ_AAPJ01000005
421.6 KB
359 CDS

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whole genome shotgun sequence
NZ_AAPJ01000006
278.6 KB
243 CDS

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whole genome shotgun sequence
NZ_AAPJ01000007
212.8 KB
185 CDS

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whole genome shotgun sequence
NZ_AAPJ01000008
140.0 KB
119 CDS

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whole genome shotgun sequence
NZ_AAPJ01000009
96.1 KB
73 CDS

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whole genome shotgun sequence
NZ_AAPJ01000010
85.8 KB
68 CDS

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whole genome shotgun sequence
NZ_AAPJ01000011
76.9 KB
71 CDS

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whole genome shotgun sequence
NZ_AAPJ01000012
41.9 KB
40 CDS

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whole genome shotgun sequence
NZ_AAPJ01000013
26.8 KB
21 CDS

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whole genome shotgun sequence
NZ_AAPJ01000014
16.8 KB
15 CDS

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whole genome shotgun sequence
NZ_AAPJ01000015
4.8 KB
3 CDS

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whole genome shotgun sequence
NZ_AAPJ01000016
1.5 KB
2 CDS

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whole genome shotgun sequence
NZ_AAPJ01000017
1.4 KB
2 CDS

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whole genome shotgun sequence
NZ_AAPJ01000018
1.4 KB
2 CDS

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whole genome shotgun sequence
NZ_AAPJ01000019
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_AAPJ01000020
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_AAPJ01000021
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_AAPJ01000022
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_AAPJ01000023
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_AAPJ01000024
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_AAPJ01000025
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_AAPJ01000026
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_AAPJ01000027
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_AAPJ01000028
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_AAPJ01000029
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_AAPJ01000030
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_AAPJ01000031
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_AAPJ01000032
1.0 KB
2 CDS

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whole genome shotgun sequence
NZ_AAPJ01000033
1.0 KB
1 CDS

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whole genome shotgun sequence
NZ_AAPJ01000034
1017 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAPJ01000035
1000 bytes
1 CDS

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References

Genomic insights into Mn(II) oxidation by the marine alphaproteobacterium Aurantimonas sp. strain SI85-9A1
Dick,G.J., Podell,S., Johnson,H.A., Rivera-Espinoza,Y., Bernier-Latmani,R., McCarthy,J.K., Torpey,J.W., Clement,B.G., Gaasterland,T. and Tebo,B.M. Appl. Environ. Microbiol. 74 (9), 2646-2658 (2008)
PubMed, PubGet, HubMed
Genomic insights into Mn(II) oxidation by the marine alphaproteobacterium Aurantimonas sp. strain SI85-9A1
Dick,G.J., Podell,S., Johnson,H.A., Rivera-Espinoza,Y., Bernier-Latmani,R., McCarthy,J.K., Torpey,J.W., Clement,B.G., Gaasterland,T. and Tebo,B.M. Appl. Environ. Microbiol. 74 (9), 2646-2658 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Aurantimonas manganoxydans SI85-9A1

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Sequences

References

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