Bacillus amyloliquefaciens FZB42

Competence Network , Goettingen Genomics Laboratory

Genome Size: 3.9 megabases, GC Content: 46.5%, Released Date: Aug. 1, 2007 #16694

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_009725
3.7 MB
3693 CDS

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References

Comparative analysis of the complete genome sequence of the plant growth-promoting bacterium Bacillus amyloliquefaciens FZB42
Chen,X.H., Koumoutsi,A., Scholz,R., Eisenreich,A., Schneider,K., Heinemeyer,I., Morgenstern,B., Voss,B., Hess,W.R., Reva,O., Junge,H., Voigt,B., Jungblut,P.R., Vater,J., Sussmuth,R., Liesegang,H., Strittmatter,A., Gottschalk,G. and Borriss,R. Nat. Biotechnol. 25 (9), 1007-1014 (2007)
PubMed, PubGet, HubMed

Taxonomy

External Links

Bacillus amyloliquefaciens FZB42

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Sequences

References

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