Bacillus anthracis str. A2012

J. Craig Venter Institute

Genome Size: 0.28 megabases, GC Content: 34.8%, Released Date: May 11, 2002 #17723

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region:   bp. upstream of a gene 
Leave blank for no restriction.

Report matches:  in any location within intergenic regions only overlapping genes only  

Allow  1 2 3 4 5 6 7 8 9  mismatched bases 

Sequences

References

• Comparative genome sequencing for discovery of novel polymorphisms in Bacillus anthracis
  Read,T.D., Salzberg,S.L., Pop,M., Shumway,M., Umayam,L., Jiang,L., Holtzapple,E., Busch,J.D., Smith,K.L., Schupp,J.M., Solomon,D., Keim,P. and Fraser,C.M. Science 296 (5575), 2028-2033 (2002)
  PubMed, PubGet, HubMed
• Comparative genome sequencing for discovery of novel polymorphisms in Bacillus anthracis
  Read,T.D., Salzberg,S.L., Pop,M., Shumway,M., Umayam,L., Jiang,L., Holtzapple,E., Busch,J.D., Smith,K.L., Schupp,J.M., Solomon,D., Keim,P. and Fraser,C.M. Science 296 (5575), 2028-2033 (2002)
  PubMed, PubGet, HubMed

Related Genomes

• Bacillus anthracis str. 'Ames Ancestor'
• Bacillus anthracis str. A0248
• Bacillus anthracis str. Ames
• Bacillus anthracis str. CDC 684
• Bacillus anthracis str. Sterne
• Bacillus anthracis Tsiankovskii-I
• Bacillus anthracis str. A0174
• Bacillus anthracis str. A0193
• Bacillus anthracis str. A0389
• Bacillus anthracis str. A0442
• Bacillus anthracis str. A0465
• Bacillus anthracis str. A0488
• Bacillus anthracis str. A1055
• Bacillus anthracis str. Australia 94
• Bacillus anthracis str. CNEVA-9066
• Bacillus anthracis str. Kruger B
• Bacillus anthracis str. Vollum
• Bacillus anthracis str. Western North America USA6153