Bacillus clausii KSM-K16

Kao Corporation, Biological Science Laboratories, Japan

Genome Size: 4.3 megabases, GC Content: 44.8%, Released Date: Jan. 3, 2005 #16709

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_006582
4.1 MB
4096 CDS

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References

High-resolution crystal structure of M-protease: phylogeny aided analysis of the high-alkaline adaptation mechanism
Shirai,T., Suzuki,A., Yamane,T., Ashida,T., Kobayashi,T., Hitomi,J. and Ito,S. Protein Eng. 10 (6), 627-634 (1997)
PubMed, PubGet, HubMed
Purification and properties of an alkaline protease from alkalophilic Bacillus sp. KSM-K16
Kobayashi,T., Hakamada,Y., Adachi,S., Hitomi,J., Yoshimatsu,T., Koike,K., Kawai,S. and Ito,S. Appl. Microbiol. Biotechnol. 43 (3), 473-481 (1995)
PubMed, PubGet, HubMed

Taxonomy

External Links

Bacillus clausii KSM-K16

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Sequences

References

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