Bacillus coahuilensis m4-4

LANGEBIO Laboratorio Nacional de Genomica para la Biodiversidad (National Laboratory of Genomics for Biodiversity), Mexico

GC Content: 38.0%, Released Date: March 20, 2008 #17764

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABFU01000001
33.3 KB
34 CDS

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whole genome shotgun sequence
NZ_ABFU01000002
21.1 KB
25 CDS

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whole genome shotgun sequence
NZ_ABFU01000003
55.2 KB
58 CDS

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whole genome shotgun sequence
NZ_ABFU01000004
3.4 KB
5 CDS

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whole genome shotgun sequence
NZ_ABFU01000005
58.4 KB
71 CDS

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whole genome shotgun sequence
NZ_ABFU01000006
38.5 KB
36 CDS

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whole genome shotgun sequence
NZ_ABFU01000007
55.4 KB
58 CDS

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whole genome shotgun sequence
NZ_ABFU01000008
5.4 KB
5 CDS

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whole genome shotgun sequence
NZ_ABFU01000009
43.6 KB
45 CDS

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whole genome shotgun sequence
NZ_ABFU01000010
82.4 KB
97 CDS

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whole genome shotgun sequence
NZ_ABFU01000011
12.4 KB
15 CDS

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whole genome shotgun sequence
NZ_ABFU01000012
44.9 KB
50 CDS

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whole genome shotgun sequence
NZ_ABFU01000013
117.4 KB
128 CDS

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whole genome shotgun sequence
NZ_ABFU01000014
13.0 KB
13 CDS

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whole genome shotgun sequence
NZ_ABFU01000015
38.2 KB
39 CDS

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whole genome shotgun sequence
NZ_ABFU01000016
74.9 KB
87 CDS

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whole genome shotgun sequence
NZ_ABFU01000017
32.6 KB
33 CDS

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whole genome shotgun sequence
NZ_ABFU01000018
95.7 KB
102 CDS

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whole genome shotgun sequence
NZ_ABFU01000019
27.3 KB
29 CDS

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whole genome shotgun sequence
NZ_ABFU01000020
33.2 KB
34 CDS

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whole genome shotgun sequence
NZ_ABFU01000021
76.5 KB
78 CDS

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whole genome shotgun sequence
NZ_ABFU01000022
12.6 KB
13 CDS

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whole genome shotgun sequence
NZ_ABFU01000023
12.2 KB
16 CDS

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whole genome shotgun sequence
NZ_ABFU01000024
57.2 KB
63 CDS

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whole genome shotgun sequence
NZ_ABFU01000025
4.9 KB
8 CDS

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whole genome shotgun sequence
NZ_ABFU01000026
18.4 KB
27 CDS

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whole genome shotgun sequence
NZ_ABFU01000027
10.9 KB
9 CDS

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whole genome shotgun sequence
NZ_ABFU01000028
250.3 KB
306 CDS

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whole genome shotgun sequence
NZ_ABFU01000029
30.4 KB
31 CDS

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whole genome shotgun sequence
NZ_ABFU01000030
115.6 KB
150 CDS

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whole genome shotgun sequence
NZ_ABFU01000031
11.2 KB
13 CDS

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whole genome shotgun sequence
NZ_ABFU01000032
56.0 KB
71 CDS

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whole genome shotgun sequence
NZ_ABFU01000033
23.6 KB
18 CDS

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whole genome shotgun sequence
NZ_ABFU01000034
12.7 KB
19 CDS

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whole genome shotgun sequence
NZ_ABFU01000035
8.8 KB
11 CDS

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whole genome shotgun sequence
NZ_ABFU01000036
14.5 KB
24 CDS

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whole genome shotgun sequence
NZ_ABFU01000037
108.5 KB
144 CDS

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whole genome shotgun sequence
NZ_ABFU01000038
13.3 KB
16 CDS

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whole genome shotgun sequence
NZ_ABFU01000039
8.0 KB
17 CDS

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whole genome shotgun sequence
NZ_ABFU01000040
47.3 KB
54 CDS

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whole genome shotgun sequence
NZ_ABFU01000041
6.6 KB
8 CDS

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whole genome shotgun sequence
NZ_ABFU01000042
105.6 KB
127 CDS

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whole genome shotgun sequence
NZ_ABFU01000043
23.9 KB
28 CDS

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whole genome shotgun sequence
NZ_ABFU01000044
24.9 KB
26 CDS

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whole genome shotgun sequence
NZ_ABFU01000045
47.1 KB
45 CDS

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whole genome shotgun sequence
NZ_ABFU01000046
55.0 KB
67 CDS

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whole genome shotgun sequence
NZ_ABFU01000047
28.0 KB
37 CDS

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whole genome shotgun sequence
NZ_ABFU01000048
56.0 KB
51 CDS

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whole genome shotgun sequence
NZ_ABFU01000049
21.8 KB
27 CDS

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whole genome shotgun sequence
NZ_ABFU01000050
38.6 KB
40 CDS

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whole genome shotgun sequence
NZ_ABFU01000051
134.4 KB
136 CDS

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whole genome shotgun sequence
NZ_ABFU01000052
55.7 KB
54 CDS

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whole genome shotgun sequence
NZ_ABFU01000053
32.2 KB
40 CDS

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whole genome shotgun sequence
NZ_ABFU01000054
8.2 KB
8 CDS

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whole genome shotgun sequence
NZ_ABFU01000055
45.2 KB
54 CDS

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whole genome shotgun sequence
NZ_ABFU01000056
38.7 KB
35 CDS

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whole genome shotgun sequence
NZ_ABFU01000057
25.7 KB
26 CDS

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whole genome shotgun sequence
NZ_ABFU01000058
69.0 KB
75 CDS

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whole genome shotgun sequence
NZ_ABFU01000059
62.4 KB
85 CDS

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whole genome shotgun sequence
NZ_ABFU01000060
243.9 KB
264 CDS

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whole genome shotgun sequence
NZ_ABFU01000061
40.9 KB
52 CDS

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whole genome shotgun sequence
NZ_ABFU01000062
758 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABFU01000063
13.2 KB
17 CDS

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whole genome shotgun sequence
NZ_ABFU01000064
65.6 KB
79 CDS

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whole genome shotgun sequence
NZ_ABFU01000065
47.5 KB
61 CDS

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whole genome shotgun sequence
NZ_ABFU01000066
90.7 KB
106 CDS

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whole genome shotgun sequence
NZ_ABFU01000067
36.1 KB
39 CDS

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whole genome shotgun sequence
NZ_ABFU01000068
24.5 KB
20 CDS

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whole genome shotgun sequence
NZ_ABFU01000069
6.1 KB
11 CDS

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whole genome shotgun sequence
NZ_ABFU01000070
1.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ABFU01000071
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABFU01000072
6.5 KB
5 CDS

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whole genome shotgun sequence
NZ_ABFU01000073
2.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ABFU01000074
3.7 KB
6 CDS

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whole genome shotgun sequence
NZ_ABFU01000075
536 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABFU01000076
175 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABFU01000077
172 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000078
172 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000079
658 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000080
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000081
97 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000082
487 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000083
624 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABFU01000084
196 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABFU01000085
270 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000086
391 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABFU01000087
627 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000088
2.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABFU01000089
675 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABFU01000090
580 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000091
307 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000092
205 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000093
294 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000094
122 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000095
68 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABFU01000096
488 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000097
162 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABFU01000098
53 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABFU01000099
143 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000100
143 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000101
688 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000102
66 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABFU01000103
184 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000104
84 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABFU01000105
130 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000106
885 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABFU01000107
655 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABFU01000108
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFU01000109
926 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000110
74 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABFU01000111
807 bytes
3 CDS

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whole genome shotgun sequence
NZ_ABFU01000112
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000113
107 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000114
141 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000115
927 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABFU01000116
98 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000117
134 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000118
605 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABFU01000119
839 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000120
71 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABFU01000121
1020 bytes
5 CDS

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whole genome shotgun sequence
NZ_ABFU01000122
430 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000123
121 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000124
806 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000125
898 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000126
151 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABFU01000127
103 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFU01000128
951 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABFU01000129
96 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABFU01000130
12.3 KB
8 CDS

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whole genome shotgun sequence
NZ_ABFU01000131
1.5 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFU01000132
3.5 KB
4 CDS

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whole genome shotgun sequence
NZ_ABFU01000133
2.8 KB
3 CDS

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whole genome shotgun sequence
NZ_ABFU01000134
2.0 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFU01000135
4.4 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFU01000136
2.0 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFU01000137
895 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABFU01000138
4.2 KB
5 CDS

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References

The genome of Bacillus coahuilensis reveals adaptations essential for survival in the relic of an ancient marine environment
Alcaraz,L.D., Olmedo,G., Bonilla,G., Cerritos,R., Hernandez,G., Cruz,A., Ramirez,E., Putonti,C., Jimenez,B., Martinez,E., Lopez,V., Arvizu,J.L., Ayala,F., Razo,F., Caballero,J., Siefert,J., Eguiarte,L., Vielle,J.P., Martinez,O., Souza,V., Herrera-Estrella,A. and Herrera-Estrella,L. Proc. Natl. Acad. Sci. U.S.A. 105 (15), 5803-5808 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Bacillus coahuilensis m4-4

Search Genome

Sequences

References

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