Bacillus halodurans C-125

Japan MSTC

Genome Size: 4.2 megabases, GC Content: 43.7%, Released Date: March 23, 1999 #16711

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

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Sequences

complete genome
NC_002570
4.0 MB
4065 CDS

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References

Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis
Takami,H., Nakasone,K., Takaki,Y., Maeno,G., Sasaki,R., Masui,N., Fuji,F., Hirama,C., Nakamura,Y., Ogasawara,N., Kuhara,S. and Horikoshi,K. Nucleic Acids Res. 28 (21), 4317-4331 (2000)
PubMed, PubGet, HubMed
Characterization and comparative study of the rrn operons of alkaliphilic Bacillus halodurans C-125
Nakasone,K., Masui,N., Takaki,Y., Sasaki,R., Maeno,G., Sakiyama,T., Hirama,C., Fuji,F. and Takami,H. Extremophiles 4 (4), 209-214 (2000)
PubMed, PubGet, HubMed
Analysis of the genome of an alkaliphilic Bacillus strain from an industrial point of view
Takami,H. and Horikoshi,K. Extremophiles 4 (2), 99-108 (2000)
PubMed, PubGet, HubMed
Genetic analysis of the chromosome of alkaliphilic Bacillus halodurans C-125
Takami,H., Takaki,Y., Nakasone,K., Sakiyama,T., Maeno,G., Sasaki,R., Hirama,C., Fuji,F. and Masui,N. Extremophiles 3 (3), 227-233 (1999)
PubMed, PubGet, HubMed
Replication origin region of the chromosome of alkaliphilic Bacillus halodurans C-125
Takami,H., Masui,N., Nakasone,K. and Horikoshi,K. Biosci. Biotechnol. Biochem. 63 (6), 1134-1137 (1999)
PubMed, PubGet, HubMed
Sequence analysis of a 32-kb region including the major ribosomal protein gene clusters from alkaliphilic Bacillus sp. strain C-125
Takami,H., Takaki,Y., Nakasone,K., Hirama,C., Inoue,A. and Horikoshi,K. Biosci. Biotechnol. Biochem. 63 (2), 452-455 (1999)
PubMed, PubGet, HubMed
Sequencing of three lambda clones from the genome of alkaliphilic Bacillus sp. strain C-125
Takami,H., Nakasone,K., Ogasawara,N., Hirama,C., Nakamura,Y., Masui,N., Fuji,F., Takaki,Y., Inoue,A. and Horikoshi,K. Extremophiles 3 (1), 29-34 (1999)
PubMed, PubGet, HubMed
An improved physical and genetic map of the genome of alkaliphilic Bacillus sp. C-125
Takami,H., Nakasone,K., Hirama,C., Takaki,Y., Masui,N., Fuji,F., Nakamura,Y. and Inoue,A. Extremophiles 3 (1), 21-28 (1999)
PubMed, PubGet, HubMed

Taxonomy

External Links

Bacillus halodurans C-125

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Sequences

References

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