Bacillus sp. m3-13

Cinvestav del IPN

Genome Size: 4.1 megabases, GC Content: 40.0%, Released Date: April 30, 2010 #20153

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

NZ_ACPC01000001, whole genome shotgun sequence
NZ_ACPC01000001
18.1 KB
16 CDS

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NZ_ACPC01000002, whole genome shotgun sequence
NZ_ACPC01000002
14.9 KB
17 CDS

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NZ_ACPC01000003, whole genome shotgun sequence
NZ_ACPC01000003
41.5 KB
42 CDS

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NZ_ACPC01000004, whole genome shotgun sequence
NZ_ACPC01000004
61.3 KB
82 CDS

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NZ_ACPC01000005, whole genome shotgun sequence
NZ_ACPC01000005
77.9 KB
79 CDS

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NZ_ACPC01000006, whole genome shotgun sequence
NZ_ACPC01000006
1.8 KB
1 CDS

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NZ_ACPC01000007, whole genome shotgun sequence
NZ_ACPC01000007
76.8 KB
70 CDS

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NZ_ACPC01000008, whole genome shotgun sequence
NZ_ACPC01000008
95.1 KB
112 CDS

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NZ_ACPC01000009, whole genome shotgun sequence
NZ_ACPC01000009
407.1 KB
430 CDS

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NZ_ACPC01000010, whole genome shotgun sequence
NZ_ACPC01000010
64.9 KB
83 CDS

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NZ_ACPC01000011, whole genome shotgun sequence
NZ_ACPC01000011
16.3 KB
20 CDS

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NZ_ACPC01000012, whole genome shotgun sequence
NZ_ACPC01000012
152.9 KB
158 CDS

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NZ_ACPC01000013, whole genome shotgun sequence
NZ_ACPC01000013
101.7 KB
106 CDS

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NZ_ACPC01000014, whole genome shotgun sequence
NZ_ACPC01000014
107.4 KB
119 CDS

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NZ_ACPC01000015, whole genome shotgun sequence
NZ_ACPC01000015
231.2 KB
273 CDS

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NZ_ACPC01000016, whole genome shotgun sequence
NZ_ACPC01000016
23.6 KB
30 CDS

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NZ_ACPC01000017, whole genome shotgun sequence
NZ_ACPC01000017
159.7 KB
203 CDS

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NZ_ACPC01000018, whole genome shotgun sequence
NZ_ACPC01000018
208.7 KB
241 CDS

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NZ_ACPC01000019, whole genome shotgun sequence
NZ_ACPC01000019
615.5 KB
640 CDS

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NZ_ACPC01000020, whole genome shotgun sequence
NZ_ACPC01000020
341.4 KB
360 CDS

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NZ_ACPC01000021, whole genome shotgun sequence
NZ_ACPC01000021
2.6 KB
4 CDS

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NZ_ACPC01000022, whole genome shotgun sequence
NZ_ACPC01000022
225.2 KB
237 CDS

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NZ_ACPC01000023, whole genome shotgun sequence
NZ_ACPC01000023
5.9 KB
7 CDS

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NZ_ACPC01000024, whole genome shotgun sequence
NZ_ACPC01000024
8.7 KB
7 CDS

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NZ_ACPC01000025, whole genome shotgun sequence
NZ_ACPC01000025
3.7 KB
5 CDS

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NZ_ACPC01000026, whole genome shotgun sequence
NZ_ACPC01000026
4.8 KB
6 CDS

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NZ_ACPC01000027, whole genome shotgun sequence
NZ_ACPC01000027
982 bytes
1 CDS

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NZ_ACPC01000028, whole genome shotgun sequence
NZ_ACPC01000028
4.7 KB
6 CDS

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NZ_ACPC01000029, whole genome shotgun sequence
NZ_ACPC01000029
559 bytes
1 CDS

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NZ_ACPC01000030, whole genome shotgun sequence
NZ_ACPC01000030
6.3 KB
7 CDS

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NZ_ACPC01000031, whole genome shotgun sequence
NZ_ACPC01000031
1.7 KB
1 CDS

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NZ_ACPC01000032, whole genome shotgun sequence
NZ_ACPC01000032
3.3 KB
6 CDS

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NZ_ACPC01000033, whole genome shotgun sequence
NZ_ACPC01000033
694 bytes
0 CDS

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NZ_ACPC01000034, whole genome shotgun sequence
NZ_ACPC01000034
1.8 KB
1 CDS

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NZ_ACPC01000035, whole genome shotgun sequence
NZ_ACPC01000035
3.1 KB
4 CDS

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NZ_ACPC01000036, whole genome shotgun sequence
NZ_ACPC01000036
5.0 KB
9 CDS

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NZ_ACPC01000037, whole genome shotgun sequence
NZ_ACPC01000037
310 bytes
1 CDS

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NZ_ACPC01000038, whole genome shotgun sequence
NZ_ACPC01000038
3.1 KB
5 CDS

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NZ_ACPC01000039, whole genome shotgun sequence
NZ_ACPC01000039
11.4 KB
16 CDS

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NZ_ACPC01000040, whole genome shotgun sequence
NZ_ACPC01000040
18.1 KB
18 CDS

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NZ_ACPC01000041, whole genome shotgun sequence
NZ_ACPC01000041
16.1 KB
21 CDS

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NZ_ACPC01000042, whole genome shotgun sequence
NZ_ACPC01000042
36.7 KB
32 CDS

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NZ_ACPC01000043, whole genome shotgun sequence
NZ_ACPC01000043
19.9 KB
25 CDS

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NZ_ACPC01000044, whole genome shotgun sequence
NZ_ACPC01000044
52.4 KB
50 CDS

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NZ_ACPC01000045, whole genome shotgun sequence
NZ_ACPC01000045
81.8 KB
93 CDS

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NZ_ACPC01000046, whole genome shotgun sequence
NZ_ACPC01000046
140.7 KB
166 CDS

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NZ_ACPC01000047, whole genome shotgun sequence
NZ_ACPC01000047
94.5 KB
89 CDS

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NZ_ACPC01000048, whole genome shotgun sequence
NZ_ACPC01000048
138.6 KB
141 CDS

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NZ_ACPC01000049, whole genome shotgun sequence
NZ_ACPC01000049
129.1 KB
178 CDS

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NZ_ACPC01000050, whole genome shotgun sequence
NZ_ACPC01000050
200.8 KB
190 CDS

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References

Understanding the evolutionary relationships and major traits of Bacillus through comparative genomics
Alcaraz,L.D., Moreno-Hagelsieb,G., Eguiarte,L.E., Souza,V., Herrera-Estrella,L. and Olmedo-Alvarez,G. BMC Genomics 11 (1), 332 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Bacillus sp. m3-13

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Sequences

References

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