Bacillus subtilis subsp. natto BEST195

Keio University, Japan

Genome Size: 4.1058 megabases, Released Date: March 24, 2010 #19770

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

*** SEQUENCING IN PROGRESS ***, 12 ordered pieces
AP011541
3.9 MB
4379 CDS

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plasmid pBEST195S DNA, complete genome
AP011542
5.7 KB
6 CDS

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References

Whole genome assembly of a natto production strain Bacillus subtilis natto from very short read data
Nishito,Y., Osana,Y., Hachiya,T., Popendorf,K., Toyoda,A., Fujiyama,A., Itaya,M. and Sakakibara,Y. BMC Genomics 11, 243 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Bacillus subtilis subsp. natto BEST195

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Sequences

References

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