Bacillus subtilis subsp. subtilis str. JH642

Baylor College of Medicine

GC Content: 43.5%, Released Date: July 23, 2008 #17775

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABQM01000001
166.0 KB
161 CDS

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whole genome shotgun sequence
NZ_ABQM01000002
220.1 KB
194 CDS

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whole genome shotgun sequence
NZ_ABQM01000003
719 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABQM01000004
63.2 KB
65 CDS

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whole genome shotgun sequence
NZ_ABQM01000005
14.1 KB
16 CDS

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whole genome shotgun sequence
NZ_ABQM01000006
514.2 KB
527 CDS

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whole genome shotgun sequence
NZ_ABQM01000007
926.5 KB
938 CDS

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whole genome shotgun sequence
NZ_ABQM01000008
1.1 MB
1315 CDS

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whole genome shotgun sequence
NZ_ABQM01000009
1015.6 KB
1046 CDS

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References

High-precision, whole-genome sequencing of laboratory strains facilitates genetic studies
Srivatsan,A., Han,Y., Peng,J., Tehranchi,A.K., Gibbs,R., Wang,J.D. and Chen,R. PLoS Genet. 4 (8), E1000139 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Bacillus subtilis subsp. subtilis str. JH642

Search Genome

Sequences

References

Related Genomes