Bacillus subtilis subsp. subtilis str. SMY

Baylor College of Medicine

GC Content: 43.5%, Released Date: July 23, 2008 #17777

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABQN01000001
166.0 KB
161 CDS

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whole genome shotgun sequence
NZ_ABQN01000002
23.6 KB
16 CDS

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whole genome shotgun sequence
NZ_ABQN01000003
31.3 KB
33 CDS

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whole genome shotgun sequence
NZ_ABQN01000004
165.8 KB
145 CDS

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whole genome shotgun sequence
NZ_ABQN01000005
63.2 KB
67 CDS

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whole genome shotgun sequence
NZ_ABQN01000006
544.3 KB
553 CDS

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whole genome shotgun sequence
NZ_ABQN01000007
161.5 KB
164 CDS

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whole genome shotgun sequence
NZ_ABQN01000008
1.9 MB
2098 CDS

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whole genome shotgun sequence
NZ_ABQN01000009
1015.6 KB
1046 CDS

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References

High-precision, whole-genome sequencing of laboratory strains facilitates genetic studies
Srivatsan,A., Han,Y., Peng,J., Tehranchi,A.K., Gibbs,R., Wang,J.D. and Chen,R. PLoS Genet. 4 (8), E1000139 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Bacillus subtilis subsp. subtilis str. SMY

Search Genome

Sequences

References

Related Genomes