Bacillus thuringiensis BMB171

Huazhong Agricultural University

Genome Size: 5.61 megabases, Released Date: May 20, 2010 #19772

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
CP001903
5.1 MB
5078 CDS

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plasmid pBMB171
CP001904
305.6 KB
271 CDS

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References

Complete genome sequence of Bacillus thuringiensis mutant strain BMB171
He,J., Shao,X., Zheng,H., Li,M., Wang,J., Zhang,Q., Li,L., Liu,Z., Sun,M., Wang,S. and Yu,Z. J. Bacteriol. 192 (15), 4074-4075 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Bacillus thuringiensis BMB171

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Sequences

References

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